2022
Atlas-Based Semantic Segmentation of Prostate Zones
Zhang J, Venkataraman R, Staib L, Onofrey J. Atlas-Based Semantic Segmentation of Prostate Zones. Lecture Notes In Computer Science 2022, 13435: 570-579. PMID: 38084296, PMCID: PMC10711803, DOI: 10.1007/978-3-031-16443-9_55.Peer-Reviewed Original ResearchSegmentation resultsSemantic segmentation frameworkSemantic segmentation resultsDice similarity coefficient valuesSemantic segmentationInference stageSegmentation frameworkSegmentation performanceExternal test datasetTest datasetRegion of interestSegmentationAnatomical atlasHyperparametersSimilarity coefficient valuesAnatomical informationGitHubUsersDatasetProstate zonesCodeFrameworkInformation
2011
Integrated Parcellation and Normalization Using DTI Fasciculography
Ho HP, Wang F, Papademetris X, Blumberg HP, Staib LH. Integrated Parcellation and Normalization Using DTI Fasciculography. Lecture Notes In Computer Science 2011, 14: 33-41. PMID: 21995010, PMCID: PMC3701295, DOI: 10.1007/978-3-642-23629-7_5.Peer-Reviewed Original ResearchConceptsDiffusion magnetic resonance imagesExtensive human interventionCumulative tracking errorsInteractive speedHuman interventionOrientation informationImage noiseMagnetic resonance imagesTracking errorVirtual pathwaysNormalization methodImagesDiffusion imagesWhite matter fasciclesFiber trackingCross-subject statisticsResonance imagesNew techniqueTrackingErrorVisualizationImplementationConnectivityInformationParcellation
2004
Neighbor-Constrained Segmentation With Level Set Based 3-D Deformable Models
Yang J, Staib LH, Duncan JS. Neighbor-Constrained Segmentation With Level Set Based 3-D Deformable Models. IEEE Transactions On Medical Imaging 2004, 23: 940-948. PMID: 15338728, PMCID: PMC2838450, DOI: 10.1109/tmi.2004.830802.Peer-Reviewed Original ResearchMeSH KeywordsAlgorithmsBrainComputer SimulationElasticityHumansImage EnhancementImage Interpretation, Computer-AssistedImaging, Three-DimensionalInformation Storage and RetrievalMagnetic Resonance ImagingModels, BiologicalModels, StatisticalNumerical Analysis, Computer-AssistedPattern Recognition, AutomatedReproducibility of ResultsSensitivity and SpecificitySignal Processing, Computer-AssistedConceptsThree-dimensional medical imagesImage gray level informationGray level informationPoint distribution modelMedical imagesNeighbor objectsTraining imagesMedical imageryMultiple objectsDeformable modelObject shapeSynthetic dataLevel informationSegmentationMap shapeEstimation frameworkPosition relationshipPrior informationLevel set functionObjectsJoint probability distributionSet functionNeighboring shapesInformationImagesGeometric strategies for neuroanatomic analysis from MRI
Duncan JS, Papademetris X, Yang J, Jackowski M, Zeng X, Staib LH. Geometric strategies for neuroanatomic analysis from MRI. NeuroImage 2004, 23: s34-s45. PMID: 15501099, PMCID: PMC2832750, DOI: 10.1016/j.neuroimage.2004.07.027.Peer-Reviewed Original ResearchConceptsApplied mathematical approachWhite matter fiber tracksStatistical estimationMathematical approachFunction-structure analysisMagnetic resonance imagesEvolution strategyGeometric constraintsImage processingIntersubject registrationRich setGeometric strategyOngoing workData setsUse of levelsCommon spaceNeuroanatomic analysisSetRegistrationFiber tracksHuman brainResonance imagesInformationSegmentationEstimation
2003
Neighbor-Constrained Segmentation with 3D Deformable Models
Yang J, Staib LH, Duncan JS. Neighbor-Constrained Segmentation with 3D Deformable Models. Lecture Notes In Computer Science 2003, 18: 198-209. PMID: 15344458, DOI: 10.1007/978-3-540-45087-0_17.Peer-Reviewed Original ResearchConceptsImage gray level informationGray level informationNeighbor objectsMedical imagesTraining imagesMedical imageryMultiple objectsDeformable modelSynthetic dataLevel informationSegmentationMap shapeEstimation frameworkPrior informationLevel set functionObjectsJoint probability distributionSet functionInformationImagesNovel methodMaximum AJoint density functionProbability distributionFramework
2002
Prior Shape Models for Boundary Finding
Staib L. Prior Shape Models for Boundary Finding. 2002, 30-33. DOI: 10.1109/isbi.2002.1029185.Peer-Reviewed Original ResearchBoundary findingTraining setAvailable training setPrior shape informationPrior informationPrior shape modelImage informationPrior shapeShape informationTarget objectBayesian formulationShape modelStatistical variationSmoothness constraintShape parametersNatural approachPosterior probabilityGeneric informationInformationObjectsAdditional flexibilitySetKey componentImagesSimilar shape
1999
Segmentation and measurement of the cortex from 3-D MR images using coupled-surfaces propagation
Zeng X, Staib L, Schultz R, Duncan J. Segmentation and measurement of the cortex from 3-D MR images using coupled-surfaces propagation. IEEE Transactions On Medical Imaging 1999, 18: 927-937. PMID: 10628952, DOI: 10.1109/42.811276.Peer-Reviewed Original ResearchConceptsImage-derived informationEasy initializationAutomatic segmentationEfficient segmentationMR imagesChallenging problemFinal representationManual segmentationThree-dimensional MR imagesSegmentationComputational efficiencyOutermost thin layerSuch problemsImagesTight couplingNew approachConvoluted natureRepresentationGeometric measurementsInitializationImplementationSulcal foldsBrain anatomyInformationConstraints
1998
Segmentation and measurement of the cortex from 3D MR images
Zeng X, Staib L, Schultz R, Duncan J. Segmentation and measurement of the cortex from 3D MR images. Lecture Notes In Computer Science 1998, 1496: 519-530. DOI: 10.1007/bfb0056237.Peer-Reviewed Original ResearchReal 3D MR imagesImage-derived informationEasy initializationAutomatic segmentationEfficient segmentationMR imagesChallenging problemFinal representationManual segmentationSegmentationComputational efficiencyOutermost thin layerImagesTight couplingNew approachConvoluted natureRepresentationGeometric measurementsInitializationSurface propagationImplementationBrain anatomyInformationConstraintsMethodVolumetric layer segmentation using coupled surfaces propagation
Zeng X, Staib L, Schultz R, Duncan J. Volumetric layer segmentation using coupled surfaces propagation. 2015 IEEE Conference On Computer Vision And Pattern Recognition (CVPR) 1998, 708-715. DOI: 10.1109/cvpr.1998.698681.Peer-Reviewed Original ResearchMedical image analysisUseful image informationMagnetic resonance brain imagesImage-derived informationImage gradient informationLevel set implementationGray level valuesEasy initializationSegmentation problemImage informationAutomatic segmentationGradient informationSet implementationBrain imagesLayer segmentationComputational efficiencyNon-brain structuresLeft ventricle myocardiumImage analysisSegmentationInformationNew approachTest examplesSurface propagationVentricle myocardium
1997
An Integrated Approach for Locating Neuroanatomical Structure from MRI
Staib L, Chakraborty A, Duncan J. An Integrated Approach for Locating Neuroanatomical Structure from MRI. International Journal Of Pattern Recognition And Artificial Intelligence 1997, 11: 1247-1269. DOI: 10.1142/s0218001497000585.Peer-Reviewed Original ResearchHomogeneous region-classified areaPrior shape informationMR brain imagesMagnetic resonance imagesComputational overheadRegion informationShape informationBrain imagesSuch imagesExtra informationImproper initializationThree-dimensional imagesDeformable surfacesImagesExperimental resultsGauss divergence theoremWide availabilityInformationOverheadResonance imagesSegmentationIntegrated approachHigh-resolution magnetic resonance imagesAlgorithmInitialization
1996
Deformable boundary finding in medical images by integrating gradient and region information
Chakraborty A, Staib L, Duncan J. Deformable boundary finding in medical images by integrating gradient and region information. IEEE Transactions On Medical Imaging 1996, 15: 859-870. PMID: 18215965, DOI: 10.1109/42.544503.Peer-Reviewed Original ResearchBoundary findingMedical imagesHomogeneous region-classified areaBiomedical image analysisGray level homogeneityRegion-based segmentationReal medical imagesComputational overheadImage segmentationRegion informationShape informationPoor initializationPerceptual notionsImage analysisNumber of experimentsSegmentationVariety of limitationsGreen's theoremImagesUnified approachAuthors' approachKey issuesNew approachOverheadInformation
1992
Boundary finding with parametrically deformable models
Staib L, Duncan J. Boundary finding with parametrically deformable models. IEEE Transactions On Pattern Analysis And Machine Intelligence 1992, 14: 1061-1075. DOI: 10.1109/34.166621.Peer-Reviewed Original ResearchBoundary findingDeformable modelElliptic Fourier decompositionProbabilistic deformable modelGlobal shape informationShape informationSynthetic imagesOptimization problemFlexible constraintsPrior informationImage qualityIrregularity of shapeObjective functionPosteriori objective functionInformationSegmentationParametric modelProbability distributionImagesObjectsModelRepresentationConstraints
1989
Parametrically deformable contour models
Staib L, Duncan J. Parametrically deformable contour models. 2015 IEEE Conference On Computer Vision And Pattern Recognition (CVPR) 1989, 98-103. DOI: 10.1109/cvpr.1989.37834.Peer-Reviewed Original ResearchElliptic Fourier decompositionProbabilistic deformable modelVariety of imagesDeformable contour modelSegmentation problemImage dataBoundary findingShape informationDeformable modelInitial experimentationContour modelOptimization problemFlexible constraintsIrregularity of shapeBetter resultsNatural objectsSegmentationGood matchParametric modelImagesObjectsExperimentationModelInformationConstraints
1988
Left Ventricular Motion and Shape Analysis Using Multiple Imaging Modalities
Duncan J, Staib L. Left Ventricular Motion and Shape Analysis Using Multiple Imaging Modalities. 1988, 457-470. DOI: 10.1007/978-1-4615-7263-3_30.Peer-Reviewed Original ResearchImage understanding systemImage-derived informationImage understandingQuantitative opinionsUnderstanding systemAvailability of dataEvidential reasoningMultiple imaging modalitiesReasoning strategiesRelative informationConcise waySpecific problemsLevel setsAnalysis systemDiagnostic imagesSystem assessmentCardiac shapeInformationLV motionPatient's heartKey featuresShape analysisDegree of confidenceSystemQuantitative results