2021
NUTM1-Rearranged Neoplasms—A Heterogeneous Group of Primitive Tumors with Expanding Spectrum of Histology and Molecular Alterations—An Updated Review
Luo W, Stevens T, Stafford P, Miettinen M, Gatalica Z, Vranic S. NUTM1-Rearranged Neoplasms—A Heterogeneous Group of Primitive Tumors with Expanding Spectrum of Histology and Molecular Alterations—An Updated Review. Current Oncology 2021, 28: 4485-4503. PMID: 34898574, PMCID: PMC8628659, DOI: 10.3390/curroncol28060381.Peer-Reviewed Original ResearchConceptsGenome-wide histone modificationsPost-meiotic spermatidsExpression of oncogenesTumor suppressor geneTranscription regulationHistone modificationsBromodomain proteinsNuclear proteinsRNA sequencingFusion proteinProtein productsSuppressor geneFusion partnerGenesSitu hybridizationDifferent clinical coursesProteinSkin adnexal tumorsPrimitive morphologyOncogenic driversInhibitor therapyClinical courseMolecular alterationsPrimitive tumorHematologic malignancies
2020
Optimized Vivid-derived Magnets photodimerizers for subcellular optogenetics in mammalian cells
Benedetti L, Marvin JS, Falahati H, Guillén-Samander A, Looger LL, De Camilli P. Optimized Vivid-derived Magnets photodimerizers for subcellular optogenetics in mammalian cells. ELife 2020, 9: e63230. PMID: 33174843, PMCID: PMC7735757, DOI: 10.7554/elife.63230.Peer-Reviewed Original ResearchConceptsProtein fusion partnersSmall subcellular volumesSubcellular optogeneticsOrganelle contactsHomodimerization interfaceProtein modulesMammalian cellsBiological processesPhysiological processesSubcellular organellesLow temperature preincubationSimultaneous photoactivationFusion partnerCell preincubationWhole cellsSubcellular volumesConcatemerizationSpatial controlSpatiotemporal confinementCellsNeurosporaOrganellesHeterodimersVIVIDProtein
2018
Diagnosis of known sarcoma fusions and novel fusion partners by targeted RNA sequencing with identification of a recurrent ACTB-FOSB fusion in pseudomyogenic hemangioendothelioma
Zhu G, Benayed R, Ho C, Mullaney K, Sukhadia P, Rios K, Berry R, Rubin B, Nafa K, Wang L, Klimstra D, Ladanyi M, Hameed M. Diagnosis of known sarcoma fusions and novel fusion partners by targeted RNA sequencing with identification of a recurrent ACTB-FOSB fusion in pseudomyogenic hemangioendothelioma. Modern Pathology 2018, 32: 609-620. PMID: 30459475, PMCID: PMC6486453, DOI: 10.1038/s41379-018-0175-7.Peer-Reviewed Original ResearchConceptsRNA sequencing assayFusion partnerClinical molecular diagnostic assaySequencing assayIn-frame fusion transcriptsFusion transcriptsDetection of gene fusionsSoft tissue tumorsOncogenic fusion transcriptsAnchored multiplex PCRMolecular diagnostic assaysPseudomyogenic hemangioendotheliomaSolid tumorsTissue tumorsTumor typesClinical management of sarcomasMultiplex PCRRNA sequencingGene fusionsTRPS1-PLAG1Molecular methodsCase of pseudomyogenic hemangioendotheliomaClinical specimensRNASequencing step
2017
A FISH assay efficiently screens for BRAF gene rearrangements in pancreatic acinar-type neoplasms
Wang L, Basturk O, Wang J, Benayed R, Middha S, Zehir A, Linkov I, Rao M, Aryeequaye R, Cao L, Chmielecki J, Ross J, Stephens P, Adsay V, Askan G, Balci S, Klimstra D. A FISH assay efficiently screens for BRAF gene rearrangements in pancreatic acinar-type neoplasms. Modern Pathology 2017, 31: 132-140. PMID: 28884748, DOI: 10.1038/modpathol.2017.106.Peer-Reviewed Original ResearchConceptsNext-generation sequencing studiesSequencing studiesNext-generation sequencing-based technologiesFusion partnerNext-generation sequencing-based platformsInhibited MAPK pathway activationFISH assaySequencing-based platformsSequencing-based studiesSequencing-based technologiesNext-generation sequencing-based analysisSequencing-based analysisGene rearrangementsBRAF gene rearrangementsNext-generation sequencingFrequent fusion partnerBRAF fusionsMAPK pathway activationAcinar cell carcinomaBRAF gene fusionsGene fusionsFISH analysisPotential therapeutic targetFISH investigationsCell carcinoma
2012
SNARE Proteins: One to Fuse and Three to Keep the Nascent Fusion Pore Open
Shi L, Shen QT, Kiel A, Wang J, Wang HW, Melia TJ, Rothman JE, Pincet F. SNARE Proteins: One to Fuse and Three to Keep the Nascent Fusion Pore Open. Science 2012, 335: 1355-1359. PMID: 22422984, PMCID: PMC3736847, DOI: 10.1126/science.1214984.Peer-Reviewed Original ResearchMeSH KeywordsAnimalsCalciumDiffusionLipid BilayersLiposomesMembrane FusionMembrane ProteinsMiceNeurotransmitter AgentsProtein Structure, TertiaryProteolipidsRatsRecombinant Fusion ProteinsSNARE ProteinsSynaptic TransmissionSynaptic VesiclesSynaptosomal-Associated Protein 25Syntaxin 1Vesicle-Associated Membrane Protein 2ConceptsVesicle-associated membrane protein 2Bilayer fusionNative transmembrane domainNascent fusion poresLipid bilayer nanodiscsMembrane protein 2Synchronous neurotransmitter releaseSNARE complexTransmembrane helicesTransmembrane domainBilayer nanodiscsFused bilayersFusion porePore opensFusion partnerBiochemical studiesProtein 2Neurotransmitter releaseNanodiscsSnareEfficient releaseSynaptic transmissionSNAREpinsFusionRelevant time scales
2007
Rbm15 Modulates Notch-Induced Transcriptional Activation and Affects Myeloid Differentiation
Ma X, Renda MJ, Wang L, Cheng EC, Niu C, Morris SW, S. AS, Krause DS. Rbm15 Modulates Notch-Induced Transcriptional Activation and Affects Myeloid Differentiation. Molecular And Cellular Biology 2007, 27: 3056-3064. PMID: 17283045, PMCID: PMC1899951, DOI: 10.1128/mcb.01339-06.Peer-Reviewed Original ResearchMeSH KeywordsAmino Acid SequenceAnimalsBasic Helix-Loop-Helix Transcription FactorsCell NucleusCHO CellsCricetinaeCricetulusDNA-Binding ProteinsDrosophila ProteinsGene Expression ProfilingHomeodomain ProteinsImmunoglobulin J Recombination Signal Sequence-Binding ProteinMiceMolecular Sequence DataMyeloid CellsMyelopoiesisNuclear ProteinsPromoter Regions, GeneticProtein BindingProtein Structure, TertiaryProtein TransportReceptors, NotchRNA-Binding ProteinsRNA, MessengerRNA, Small InterferingTranscription Factor HES-1Transcription, GeneticTranscriptional ActivationConceptsN-terminusPromoter activityMyeloid differentiationCell linesCell type-specific mannerMyeloid precursor cell linePrimary murine cellsType-specific mannerDominant negative effectStimulation of NotchHematopoietic cell linesHuman erythroleukemia cellsPrecursor cell lineMurine cell linesHematopoietic stem cellsTranscriptional activationHes1 transcriptionRNA interferenceErythroleukemia cellsFusion proteinHes1 promoter activityMurine cellsFusion partnerHematopoietic cellsRBM15
2001
Synaptotagmin VII as a Plasma Membrane Ca2+ Sensor in Exocytosis
Sugita S, Han W, Butz S, Liu X, Fernández-Chacón R, Lao Y, Südhof T. Synaptotagmin VII as a Plasma Membrane Ca2+ Sensor in Exocytosis. Neuron 2001, 30: 459-473. PMID: 11395007, DOI: 10.1016/s0896-6273(01)00290-2.Peer-Reviewed Original ResearchMeSH KeywordsAgingAlternative SplicingAmino Acid SequenceAnimalsAnimals, NewbornBrainCalciumCalcium-Binding ProteinsCell MembraneCloning, MolecularEmbryo, MammalianExocytosisExonsGene Expression Regulation, DevelopmentalGreen Fluorescent ProteinsLuminescent ProteinsMaleMembrane GlycoproteinsMiceMolecular Sequence DataNerve Tissue ProteinsOrgan SpecificityPC12 CellsRatsRecombinant Fusion ProteinsSequence AlignmentSequence Homology, Amino AcidSynapsesSynaptotagminsTransfectionConceptsSynaptotagmin VIIPlasma membraneNeuroendocrine PC12 cellsSynaptic vesiclesSynaptic vesicle exocytosisPlasma membrane Ca2Presynaptic active zoneVesicle exocytosisSynaptic exocytosisDependent exocytosisCentral synapsesRegulated patternSynaptotagmin IExocytosisMembrane Ca2SynaptotagminFusion partnerPC12 cellsNeuroendocrine cellsNeurotransmitter releasePotent inhibitorVesiclesActive zoneMembraneCells
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