Publications

Featured Publications

Interventions to Mitigate EHR and Documentation Burden in Health Professions Trainees: A Scoping Review
Levy D, Rossetti S, Brandt C, Melnick E, Hamilton A, Rinne S, Womack D, Mohan V. Interventions to Mitigate EHR and Documentation Burden in Health Professions Trainees: A Scoping Review. Applied Clinical Informatics 2025, 16: 111-127. PMID: 39366661, PMCID: PMC11798655, DOI: 10.1055/a-2434-5177.
Peer-Reviewed Original Research
Concepts
Ascle—A Python Natural Language Processing Toolkit for Medical Text Generation: Development and Evaluation Study
Yang R, Zeng Q, You K, Qiao Y, Huang L, Hsieh C, Rosand B, Goldwasser J, Dave A, Keenan T, Ke Y, Hong C, Liu N, Chew E, Radev D, Lu Z, Xu H, Chen Q, Li I. Ascle—A Python Natural Language Processing Toolkit for Medical Text Generation: Development and Evaluation Study. Journal Of Medical Internet Research 2024, 26: e60601. PMID: 39361955, PMCID: PMC11487205, DOI: 10.2196/60601.
Peer-Reviewed Original Research
MeSH Keywords and Concepts
Augmenting biomedical named entity recognition with general-domain resources
Yin Y, Kim H, Xiao X, Wei C, Kang J, Lu Z, Xu H, Fang M, Chen Q. Augmenting biomedical named entity recognition with general-domain resources. Journal Of Biomedical Informatics 2024, 159: 104731. PMID: 39368529, DOI: 10.1016/j.jbi.2024.104731.
Peer-Reviewed Original Research
Concepts
Detection of Gastrointestinal Bleeding With Large Language Models to Aid Quality Improvement and Appropriate Reimbursement
Zheng N, Keloth V, You K, Kats D, Li D, Deshpande O, Sachar H, Xu H, Laine L, Shung D. Detection of Gastrointestinal Bleeding With Large Language Models to Aid Quality Improvement and Appropriate Reimbursement. Gastroenterology 2024, 168: 111-120.e4. PMID: 39304088, DOI: 10.1053/j.gastro.2024.09.014.
Peer-Reviewed Original Research
Concepts
Relation extraction using large language models: a case study on acupuncture point locations
Li Y, Peng X, Li J, Zuo X, Peng S, Pei D, Tao C, Xu H, Hong N. Relation extraction using large language models: a case study on acupuncture point locations. Journal Of The American Medical Informatics Association 2024, 31: 2622-2631. PMID: 39208311, PMCID: PMC11491641, DOI: 10.1093/jamia/ocae233.
Peer-Reviewed Original Research
Concepts
Privacy-Enhancing Technologies in Biomedical Data Science
Cho H, Froelicher D, Dokmai N, Nandi A, Sadhuka S, Hong M, Berger B. Privacy-Enhancing Technologies in Biomedical Data Science. Annual Review Of Biomedical Data Science 2024, 7: 317-343. PMID: 39178425, PMCID: PMC11346580, DOI: 10.1146/annurev-biodatasci-120423-120107.
Peer-Reviewed Original Research
MeSH Keywords and Concepts
Balancing the efforts of chart review and gains in PRS prediction accuracy: An empirical study
Lei Y, Christian Naj A, Xu H, Li R, Chen Y. Balancing the efforts of chart review and gains in PRS prediction accuracy: An empirical study. Journal Of Biomedical Informatics 2024, 157: 104705. PMID: 39134233, DOI: 10.1016/j.jbi.2024.104705.
Peer-Reviewed Original Research
Concepts
Secure discovery of genetic relatives across large-scale and distributed genomic datasets
Hong M, Froelicher D, Magner R, Popic V, Berger B, Cho H. Secure discovery of genetic relatives across large-scale and distributed genomic datasets. Genome Research 2024, 34: gr.279057.124. PMID: 39111815, PMCID: PMC11529841, DOI: 10.1101/gr.279057.124.
Peer-Reviewed Original Research
Concepts
Outpatient reception via collaboration between nurses and a large language model: a randomized controlled trial
Wan P, Huang Z, Tang W, Nie Y, Pei D, Deng S, Chen J, Zhou Y, Duan H, Chen Q, Long E. Outpatient reception via collaboration between nurses and a large language model: a randomized controlled trial. Nature Medicine 2024, 30: 2878-2885. PMID: 39009780, DOI: 10.1038/s41591-024-03148-7.
Peer-Reviewed Original Research
Concepts
Leveraging error-prone algorithm-derived phenotypes: Enhancing association studies for risk factors in EHR data
Lu Y, Tong J, Chubak J, Lumley T, Hubbard R, Xu H, Chen Y. Leveraging error-prone algorithm-derived phenotypes: Enhancing association studies for risk factors in EHR data. Journal Of Biomedical Informatics 2024, 157: 104690. PMID: 39004110, DOI: 10.1016/j.jbi.2024.104690.
Peer-Reviewed Original Research
Concepts
Develop and validate a computable phenotype for the identification of Alzheimer's disease patients using electronic health record data
He X, Wei R, Huang Y, Chen Z, Lyu T, Bost S, Tong J, Li L, Zhou Y, Li Z, Guo J, Tang H, Wang F, DeKosky S, Xu H, Chen Y, Zhang R, Xu J, Guo Y, Wu Y, Bian J. Develop and validate a computable phenotype for the identification of Alzheimer's disease patients using electronic health record data. Alzheimer's & Dementia Diagnosis Assessment & Disease Monitoring 2024, 16: e12613. PMID: 38966622, PMCID: PMC11220631, DOI: 10.1002/dad2.12613.
Peer-Reviewed Original Research
Concepts
Electronic Health Record Concordance with Survey-Reported Military Sexual Trauma Among Younger Veterans: Associations with Health Care Utilization and Mental Health Diagnoses
Gaffey A, Burg M, Skanderson M, Deviva J, Brandt C, Bastian L, Haskell S. Electronic Health Record Concordance with Survey-Reported Military Sexual Trauma Among Younger Veterans: Associations with Health Care Utilization and Mental Health Diagnoses. Journal Of Women's Health 2024, 34: 125-132. PMID: 38946553, DOI: 10.1089/jwh.2023.0993.
Peer-Reviewed Original Research
Concepts

2025

Two-photon and three-photon excitation in GaN by spectrally broadband and few-cycle laser pulses
Wang M, Xiao J, Wang M, Yi J, Song Y, Zhang Y, Wang J, Cao B, Lienau C, Xu K. Two-photon and three-photon excitation in GaN by spectrally broadband and few-cycle laser pulses. Optics & Laser Technology 2025, 191: 113334. DOI: 10.1016/j.optlastec.2025.113334.
Peer-Reviewed Original Research
Concepts
Vision-language foundation model for generalizable nasal disease diagnosis using unlabeled endoscopic records
Liu X, Gong W, Chen X, Li Z, Liu Y, Wang L, Liu Q, Sun X, Liu X, Chen X, Shi Y, Yu H. Vision-language foundation model for generalizable nasal disease diagnosis using unlabeled endoscopic records. Pattern Recognition 2025, 165: 111646. DOI: 10.1016/j.patcog.2025.111646.
Peer-Reviewed Original Research
Concepts
Luminescence properties of homoepitaxial Mg-doped GaN under different doping concentrations and annealing atmospheres
Wu W, Shu Z, Wang X, Wang Y, Pan Y, Sun J, Gao X, Zheng S, Wang M, Zeng X, Xu K. Luminescence properties of homoepitaxial Mg-doped GaN under different doping concentrations and annealing atmospheres. Journal Of Luminescence 2025, 284: 121294. DOI: 10.1016/j.jlumin.2025.121294.
Peer-Reviewed Original Research
Concepts
Emergency Department Implementation of a Multimodal Electronic Health Record–Integrated Clinical Intervention for High-Sensitivity Troponin Testing Increases Diagnostic Efficiency
Sangal R, Iscoe M, Rothenberg C, Possick S, Taylor R, Safdar B, Desai N, Rhodes D, Venkatesh A. Emergency Department Implementation of a Multimodal Electronic Health Record–Integrated Clinical Intervention for High-Sensitivity Troponin Testing Increases Diagnostic Efficiency. Journal Of The American College Of Emergency Physicians Open 2025, 6: 100202. DOI: 10.1016/j.acepjo.2025.100202.
Peer-Reviewed Original Research
Concepts
Microstructure and thermal conductance of the AlN-on-sapphire heterostructure prepared by metal-organic chemical vapor deposition
Wang L, Zhou J, Su X, Chen J, Li Z, Zhu J, Zhang Z, Chang G, Xia S, Yin T, Niu M, Tang D, Xu K. Microstructure and thermal conductance of the AlN-on-sapphire heterostructure prepared by metal-organic chemical vapor deposition. Vacuum 2025, 238: 114335. DOI: 10.1016/j.vacuum.2025.114335.
Peer-Reviewed Original Research
Concepts
Equitable Collaboration Between LMIC and HIC Researchers, Part I: A Preliminary Framework for Capacity Building in Psychiatric Genetics Research.
Cabrera-Mendoza B, Burmeister M, Rietschel M, Crepaz-Keay D, Balhara YPS, Seedat S, Marshe V, Hemmings S, Peterson R, Kaushik R, Viswanath B, Sud R, Haldar P, Johnstone M, Cherian AV, Lencz T, Zinkstok J, Polimanti R, Mueller DJ, Lázaro-Muñoz G, Liu C, John N 1st, Nicolini H, Walss-Bass C, Santoro M, Satapathy S, Behera C, Docherty AR. Equitable Collaboration Between LMIC and HIC Researchers, Part I: A Preliminary Framework for Capacity Building in Psychiatric Genetics Research. Am J Med Genet B Neuropsychiatr Genet 2025, e33042. PMID: 40635475, DOI: 10.1002/ajmg.b.33042.
Peer-Reviewed Reviews, Practice Guidelines, Standards, and Consensus Statements
False-positive tolerant model misconduct mitigation in distributed federated learning on electronic health record data across clinical institutions.
Edelson M, Pham A, Kuo TT. False-positive tolerant model misconduct mitigation in distributed federated learning on electronic health record data across clinical institutions. Sci Rep 2025, 15: 23310. PMID: 40603924, DOI: 10.1038/s41598-025-04069-2.
Peer-Reviewed Original Research
The Effect of Ambient Artificial Intelligence Scribes on Trainee Documentation Burden.
Wright DS, Kanaparthy N, Melnick ER, Levy DR, Huot SJ, Hsiao A, Schwamm L, Ong SY. The Effect of Ambient Artificial Intelligence Scribes on Trainee Documentation Burden. Appl Clin Inform 2025 PMID: 40602775, DOI: 10.1055/a-2647-1142.
Peer-Reviewed Original Research
Texture and noise dual adaptation for infrared image super-resolution
Huang Y, Miyazaki T, Liu X, Dong Y, Omachi S. Texture and noise dual adaptation for infrared image super-resolution. Pattern Recognition 2025, 163: 111449. DOI: 10.1016/j.patcog.2025.111449.
Peer-Reviewed Original Research
Concepts
JACC Data Report Cardiovascular Disease Mortality Trends in the United States (1999-2023)
Yan B, Arun A, Curtis L, Kadakia K, Lin Z, Lu Y, Wadhera R, Krumholz H, Dhruva S. JACC Data Report Cardiovascular Disease Mortality Trends in the United States (1999-2023). Journal Of The American College Of Cardiology 2025, 85: 2495-2498. PMID: 40562514, DOI: 10.1016/j.jacc.2025.05.018.
Peer-Reviewed Original Research
Ta-based Au-free and low annealing temperature ohmic contacts on GaN and AlGaN/GaN heterostructures
Xia S, Zhang Y, Sun Y, Zhu Q, Liu W, Wang J, Xu K. Ta-based Au-free and low annealing temperature ohmic contacts on GaN and AlGaN/GaN heterostructures. Materials Letters 2025, 391: 138473. DOI: 10.1016/j.matlet.2025.138473.
Peer-Reviewed Original Research
Concepts
The Psychiatric Genomics Consortium: discoveries and directions
Agrawal A, Bulik C, Abebe D, Andreassen O, Atkinson E, Choi K, Corvin A, Davies H, Davis L, Docherty A, Edenberg H, Franke B, Gelernter J, Giusti-Rodríguez P, Hettema J, Hjerling-Leffler J, Huang H, Johnson E, Lewis C, Lu Y, Lynall M, Martin J, McIntosh A, Montalvo-Ortiz J, Mullins N, Nievergelt C, O'Connell K, O'Donovan M, Okewole A, Peterson R, Posthuma D, Sebat J, Smoller J, Sud R, Viswanath B, Walters J, Won H, Wray N, Sullivan P, Consortium T. The Psychiatric Genomics Consortium: discoveries and directions. The Lancet Psychiatry 2025 PMID: 40582370, DOI: 10.1016/s2215-0366(25)00124-5.
Peer-Reviewed Original Research
Concepts
Delayed Hypertension Diagnosis and Its Association with Cardiovascular Treatment and Outcomes
Lu Y, Brush JE Jr, Kim C, et al. Delayed hypertension diagnosis and its association with cardiovascular treatment and outcomes. JAMA Network Open. 2025;8(7):e2520498. doi:10.1001/jamanetworkopen.2025.20498
Peer-Reviewed Original Research In Press

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