Publications

Featured Publications

Real-World Evidence Synthesis of Digital Scribes Using Ambient Listening and Generative Artificial Intelligence for Clinician Documentation Workflows: Rapid Review
Kanaparthy N, Villuendas-Rey Y, Bakare T, Diao Z, Iscoe M, Loza A, Wright D, Safranek C, Faustino I, Brackett A, Melnick E, Taylor R. Real-World Evidence Synthesis of Digital Scribes Using Ambient Listening and Generative Artificial Intelligence for Clinician Documentation Workflows: Rapid Review. JMIR AI 2025, 4: e76743. PMID: 41071988, PMCID: PMC12513689, DOI: 10.2196/76743.
Peer-Reviewed Original Research
Concepts
Extracting language information from clinical notes using large language models
Qian L, Hong N, Zhou Y, Xie Q, Weng R, Chairuengjitjaras P, Du X, Lian J, Marshall G, Blackley S, Novoa-Laurentiev J, Quiroz Y, Kim T, Adams N, Dossett M, Zhou L, Xu H. Extracting language information from clinical notes using large language models. International Journal Of Medical Informatics 2025, 205: 106116. PMID: 40992205, PMCID: PMC12490899, DOI: 10.1016/j.ijmedinf.2025.106116.
Peer-Reviewed Original Research
MeSH Keywords and Concepts
Integrating rule-based NLP and large language models for statin information extraction from clinical notes
Liu S, McCoy A, Chen Q, Wright A. Integrating rule-based NLP and large language models for statin information extraction from clinical notes. International Journal Of Medical Informatics 2025, 205: 106104. PMID: 40925145, PMCID: PMC12705237, DOI: 10.1016/j.ijmedinf.2025.106104.
Peer-Reviewed Original Research
Concepts
Multimodal Imaging to Improve Patient Selection and Optimize Treatment Planning and Delivery for Patients Undergoing Reirradiation: A Scoping Review
Beddok A, Rozenblum L, Calugaru V, Feuvret L, Champion L, Eddine C, Crehange G, El Fakhri G, Buvat I. Multimodal Imaging to Improve Patient Selection and Optimize Treatment Planning and Delivery for Patients Undergoing Reirradiation: A Scoping Review. Current Oncology Reports 2025, 27: 1155-1169. PMID: 40830323, DOI: 10.1007/s11912-025-01708-9.
Peer-Reviewed Original Research
Concepts
Polygenic Resistance to Blood Pressure Treatment and Stroke Risk: Insights from the All of Us Research Program
Huo S, Rivier C, Clocchiatti‐Tuozzo S, Renedo D, Petersen N, de Havenon A, Meeker D, Zhao H, Ohno‐Machado L, Sheth K, Falcone G. Polygenic Resistance to Blood Pressure Treatment and Stroke Risk: Insights from the All of Us Research Program. Annals Of Neurology 2025 PMID: 40827941, DOI: 10.1002/ana.78009.
Peer-Reviewed Original Research
Concepts
Usability and adoption in a randomized trial of GutGPT a GenAI tool for gastrointestinal bleeding
Chung S, Giuffrè M, Rajashekar N, Pu Y, Shin Y, Kresevic S, Chan C, Nakamura-Sakai S, You K, Saarinen T, Hsiao A, Wong A, Evans L, McCall T, Kizilcec R, Sekhon J, Laine L, Shung D. Usability and adoption in a randomized trial of GutGPT a GenAI tool for gastrointestinal bleeding. Npj Digital Medicine 2025, 8: 527. PMID: 40825997, PMCID: PMC12361555, DOI: 10.1038/s41746-025-01896-5.
Peer-Reviewed Original Research
Concepts
Molecular characterization of Kawasaki disease subgroups using cell-free RNA profiling
Loy C, Wang H, Kim J, Shimizu C, Lenz J, Belcher E, Tremoulet A, Burns J, De Vlaminck I. Molecular characterization of Kawasaki disease subgroups using cell-free RNA profiling. Scientific Reports 2025, 15: 29799. PMID: 40813796, PMCID: PMC12354920, DOI: 10.1038/s41598-025-15843-7.
Peer-Reviewed Original Research
MeSH Keywords and Concepts
Multi-modal clustering reveals event-free patient subgroup in colorectal cancer survival
Janakarajan N, Larghero G, Rodríguez Martínez M. Multi-modal clustering reveals event-free patient subgroup in colorectal cancer survival. Npj Systems Biology And Applications 2025, 11: 86. PMID: 40753169, PMCID: PMC12318085, DOI: 10.1038/s41540-025-00557-3.
Peer-Reviewed Original Research
MeSH Keywords and Concepts
False-positive tolerant model misconduct mitigation in distributed federated learning on electronic health record data across clinical institutions
Edelson M, Pham A, Kuo T. False-positive tolerant model misconduct mitigation in distributed federated learning on electronic health record data across clinical institutions. Scientific Reports 2025, 15: 23310. PMID: 40603924, PMCID: PMC12223104, DOI: 10.1038/s41598-025-04069-2.
Peer-Reviewed Original Research
MeSH Keywords and Concepts
475 Calibrating Diagnostic Errors: The Emergence of a Diagnostic “Gray” Zone
Pavuluri S, Sangal R, Venkatesh A, Taylor R, Sather J. 475 Calibrating Diagnostic Errors: The Emergence of a Diagnostic “Gray” Zone. Annals Of Emergency Medicine 2025, 86: s204. DOI: 10.1016/j.annemergmed.2025.06.494.
Peer-Reviewed Original Research
Predicting tumor recurrence site after reirradiation in head and neck cancer: a retrospective external validation of a published [18F]-FDG PET radiomic signature
Beddok A, Grogg K, Nioche C, Rozenblum L, Orlhac F, Calugaru V, Crehange G, Shih H, Marin T, Buvat I, El Fakhri G. Predicting tumor recurrence site after reirradiation in head and neck cancer: a retrospective external validation of a published [18F]-FDG PET radiomic signature. La Radiologia Medica 2025, 130: 1854-1863. PMID: 40833475, DOI: 10.1007/s11547-025-02072-1.
Peer-Reviewed Original Research
Concepts
A Measurement Science Framework to Optimize CDS for Opioid Use Disorder Treatment in the ED
Iscoe M, Hooper C, Levy D, Lutz J, Paek H, Rose C, Kannampallil T, Meeker D, Dziura J, Melnick E. A Measurement Science Framework to Optimize CDS for Opioid Use Disorder Treatment in the ED. Applied Clinical Informatics 2025, 16: 1067-1076. PMID: 40834872, PMCID: PMC12431813, DOI: 10.1055/a-2595-0317.
Peer-Reviewed Original Research
MeSH Keywords and Concepts
In vivo 3D myocardial membrane potential mapping in humans using PET/MRI
Bijari F, Han P, Marin T, Lee W, Chemli Y, Gertsenshteyn I, Mounime I, Djebra Y, Chi D, Normandin M, Ma C, Fakhri G. In vivo 3D myocardial membrane potential mapping in humans using PET/MRI. EJNMMI Research 2025, 15: 93. PMID: 40715686, PMCID: PMC12297085, DOI: 10.1186/s13550-025-01287-7.
Peer-Reviewed Original Research
Concepts
Gut‑lung axis microbiome: Towards precision medicine in respiratory disorders (Review)
Manoharan S, Iyappan O, Prabahar A, Bhasuran B, Raja K. Gut‑lung axis microbiome: Towards precision medicine in respiratory disorders (Review). World Academy Of Sciences Journal 2025, 7: 1-15. DOI: 10.3892/wasj.2025.376.
Peer-Reviewed Original Research
AI Workflow, External Validation, and Development in Eye Disease Diagnosis
Chen Q, Keenan T, Agron E, Allot A, Guan E, Duong B, Elsawy A, Hou B, Xue C, Bhandari S, Broadhead G, Cousineau-Krieger C, Davis E, Gensheimer W, Golshani C, Grasic D, Gupta S, Haddock L, Konstantinou E, Lamba T, Maiberger M, Mantopoulos D, Mehta M, Elnahry A, AL-Nawaflh M, Oshinsky A, Powell B, Purt B, Shin S, Stiefel H, Thavikulwat A, Wroblewski K, Tham Y, Cheung C, Cheng C, Chew E, Hribar M, Chiang M, Lu Z. AI Workflow, External Validation, and Development in Eye Disease Diagnosis. JAMA Network Open 2025, 8: e2517204. PMID: 40668583, PMCID: PMC12268484, DOI: 10.1001/jamanetworkopen.2025.17204.
Peer-Reviewed Original Research
MeSH Keywords and Concepts

2026

Artificial intelligence in spine care: A scoping review of treatment applications
Bensel V, Habeck A, Brunot M, Becton E, Ray M, Brackett A, Lisi A. Artificial intelligence in spine care: A scoping review of treatment applications. North American Spine Society Journal (NASSJ) 2026, 25: 100827. DOI: 10.1016/j.xnsj.2025.100827.
Peer-Reviewed Original Research
Concepts
Genomic Studies of Suicidal Thoughts and Behaviors in Latin American Populations: A Systematic Review.
Cabrera-Mendoza B, Panzenhagen AC, de Anda-Jáuregui G, He J, Magalhaes PVS, Martínez-Magaña JJ, Martínez-Levy GA, Qiu D, Sotelo D, Torres D, Medrano JV, Vidal G, Velásquez MM, Nicolini H, Polimanti R, Kaster MP, Docherty AR, Kimbrel NA, Genis-Mendoza AD, Ito LT, Shansis FM, Rovaris DL, Folego-Temoteo I, Fries GR, Suicide Working Group from the Latin America Genomics Consortium. Genomic Studies of Suicidal Thoughts and Behaviors in Latin American Populations: A Systematic Review. Biol Psychiatry 2026 PMID: 41539590, DOI: 10.1016/j.biopsych.2025.12.009.
Peer-Reviewed Original Research
Using generative artificial intelligence to standardize unstructured antigen profiles for the alloantibody exchange.
McCann K, Wright DS, Alvarez E, Sullivan JC, Cantrell K, Hauser RG. Using generative artificial intelligence to standardize unstructured antigen profiles for the alloantibody exchange. Transfusion 2026 PMID: 41481809, DOI: 10.1111/trf.70061.
Peer-Reviewed Original Research

2025

See All Publications

Publications

Featured Publications

Real-World Evidence Synthesis of Digital Scribes Using Ambient Listening and Generative Artificial Intelligence for Clinician Documentation Workflows: Rapid Review

Extracting language information from clinical notes using large language models

Integrating rule-based NLP and large language models for statin information extraction from clinical notes

Multimodal Imaging to Improve Patient Selection and Optimize Treatment Planning and Delivery for Patients Undergoing Reirradiation: A Scoping Review

Polygenic Resistance to Blood Pressure Treatment and Stroke Risk: Insights from the All of Us Research Program

Usability and adoption in a randomized trial of GutGPT a GenAI tool for gastrointestinal bleeding

Molecular characterization of Kawasaki disease subgroups using cell-free RNA profiling

Multi-modal clustering reveals event-free patient subgroup in colorectal cancer survival

False-positive tolerant model misconduct mitigation in distributed federated learning on electronic health record data across clinical institutions

475 Calibrating Diagnostic Errors: The Emergence of a Diagnostic “Gray” Zone

Predicting tumor recurrence site after reirradiation in head and neck cancer: a retrospective external validation of a published [18F]-FDG PET radiomic signature

A Measurement Science Framework to Optimize CDS for Opioid Use Disorder Treatment in the ED

In vivo 3D myocardial membrane potential mapping in humans using PET/MRI

Gut‑lung axis microbiome: Towards precision medicine in respiratory disorders (Review)

AI Workflow, External Validation, and Development in Eye Disease Diagnosis

2026

Artificial intelligence in spine care: A scoping review of treatment applications

Genomic Studies of Suicidal Thoughts and Behaviors in Latin American Populations: A Systematic Review.

Using generative artificial intelligence to standardize unstructured antigen profiles for the alloantibody exchange.

2025

Design of precision therapeutics for a CKD risk allele by targeting Shroom3-Rock interaction.

Military Sexual Trauma and the Incidence of Gynecologic Cancers Among Women Veterans

Impact of Depth-of-Interaction and Spatially-Variant Point-Spread-Function Model on the Performance of Ultra-High Resolution Brain PET

Characterization of gut microbiomes in rural Honduras reveals uncharacterized species and associations with human genetic variation

MTHFR allele and one-carbon metabolic profile predict severity of COVID-19

Physics-Informed List-Mode Deep Image Prior Reconstruction with Motion Correction in 3D Brain PET

Smoking Cessation Among Patients with Chronic Pain in a Comparative Effectiveness Trial