2023
Cross Atlas Remapping via Optimal Transport (CAROT): Creating connectomes for different atlases when raw data is not available
Dadashkarimi J, Karbasi A, Liang Q, Rosenblatt M, Noble S, Foster M, Rodriguez R, Adkinson B, Ye J, Sun H, Camp C, Farruggia M, Tejavibulya L, Dai W, Jiang R, Pollatou A, Scheinost D. Cross Atlas Remapping via Optimal Transport (CAROT): Creating connectomes for different atlases when raw data is not available. Medical Image Analysis 2023, 88: 102864. PMID: 37352650, PMCID: PMC10526726, DOI: 10.1016/j.media.2023.102864.Peer-Reviewed Original ResearchConceptsDifferent atlasesRaw data accessWeb applicationData accessOpen source dataSource codePatient privacyOptimal transportRaw dataStorage concernsLarge-scale data collection effortsOriginal counterpartsExtensive setData collection effortsProcessing effortPredictive modelNeuroimaging dataDownstream analysisPrivacyAtlasesCollection effortsComputationalTime seriesDatasetConnectomeConnectome-based machine learning models are vulnerable to subtle data manipulations
Rosenblatt M, Rodriguez R, Westwater M, Dai W, Horien C, Greene A, Constable R, Noble S, Scheinost D. Connectome-based machine learning models are vulnerable to subtle data manipulations. Patterns 2023, 4: 100756. PMID: 37521052, PMCID: PMC10382940, DOI: 10.1016/j.patter.2023.100756.Peer-Reviewed Original ResearchData manipulationNoise attacksPrediction performanceMachine learning modelsManipulated dataLearning modelHigh trustworthinessConnectome dataTrustworthinessAttacksModel performancePredictive modelDownstream analysisPerformanceAcademic researchMachineRobustnessModelConnectomeConnectome-based modelsFunctional connectomeManipulationTransdiagnostic Connectome-Based Prediction of Craving
Garrison K, Sinha R, Potenza M, Gao S, Liang Q, Lacadie C, Scheinost D. Transdiagnostic Connectome-Based Prediction of Craving. American Journal Of Psychiatry 2023, 180: 445-453. PMID: 36987598, DOI: 10.1176/appi.ajp.21121207.Peer-Reviewed Original ResearchConceptsConnectome-based predictive modelingImagery conditionFunctional connectomeSelf-reported cravingStudy of motivationDefault mode networkFunctional connectivity dataIndependent samplesKey phenomenological featuresNeural signaturesTransdiagnostic sampleTransdiagnostic perspectiveMode networkMotivated behaviorCentral constructAddictive disordersHuman behaviorConnectivity dataPhenomenological featuresStrongest predictorCravingTaskSubstance use-related disordersConnectomeIndividualsPredicting depressed and elevated mood symptomatology in bipolar disorder using brain functional connectomes
Sankar A, Shen X, Colic L, Goldman D, Villa L, Kim J, Pittman B, Scheinost D, Constable R, Blumberg H. Predicting depressed and elevated mood symptomatology in bipolar disorder using brain functional connectomes. Psychological Medicine 2023, 53: 6656-6665. PMID: 36891769, PMCID: PMC10491744, DOI: 10.1017/s003329172300003x.Peer-Reviewed Original ResearchBipolar disorderYoung Mania Rating ScaleMania Rating ScaleFunctional connectomeBrain functional connectomeSymptom scoresHamilton DepressionMagnetic resonance imaging dataEmotion processing taskMood symptomatologyRating ScaleFunctional magnetic resonance imaging (fMRI) dataConnectomeAdultsImaging dataIndependent samplesPredictive abilitySymptomatology
2022
A cognitive state transformation model for task-general and task-specific subsystems of the brain connectome
Yoo K, Rosenberg MD, Kwon YH, Scheinost D, Constable RT, Chun MM. A cognitive state transformation model for task-general and task-specific subsystems of the brain connectome. NeuroImage 2022, 257: 119279. PMID: 35577026, PMCID: PMC9307138, DOI: 10.1016/j.neuroimage.2022.119279.Peer-Reviewed Original ResearchConceptsDifferent cognitive statesCognitive stateWhole-brain functional connectomeRelevant individual differencesFunctional reorganizationFunctional magnetic resonanceResting-state dataSpecific task goalsTask-induced modulationHuman Connectome ProjectContext-dependent changesIndividual differencesTask goalsContextual demandsBehavioral predictionsCognitive behaviorFunctional connectomeConnectome ProjectBrain connectomeHuman brainBrain functional reorganizationC2C modelConnectomeBrainMemoryLarge-scale differences in functional organization of left- and right-handed individuals using whole-brain, data-driven analysis of connectivity
Tejavibulya L, Peterson H, Greene A, Gao S, Rolison M, Noble S, Scheinost D. Large-scale differences in functional organization of left- and right-handed individuals using whole-brain, data-driven analysis of connectivity. NeuroImage 2022, 252: 119040. PMID: 35272202, PMCID: PMC9013515, DOI: 10.1016/j.neuroimage.2022.119040.Peer-Reviewed Original ResearchConceptsHanded individualsFunctional connectivityLanguage areasWhole-brain functional connectivityRight-handed individualsFunctional organizationWhole-brain levelIndividual differencesHandedness differencesHandedness effectsFunctional connectomeBrain levelsSomatosensory cortexNetworks of interestWhole brainSex differencesBrainConnectomeIndividualsData-driven analysisConnectivityDistinct patternsLateralizationDifferencesSimilar amounts
2019
The individual functional connectome is unique and stable over months to years
Horien C, Shen X, Scheinost D, Constable RT. The individual functional connectome is unique and stable over months to years. NeuroImage 2019, 189: 676-687. PMID: 30721751, PMCID: PMC6422733, DOI: 10.1016/j.neuroimage.2019.02.002.Peer-Reviewed Original ResearchConceptsHigh ID ratesIndividual differencesFunctional connectomeIndividual functional connectomesStable individual differencesID rateResting-state fMRI datasetsFrontoparietal networkFunctional connectivityParietal cortexFMRI datasetsIdiosyncratic aspectsConnectomeHead motionEntire brainFMRIBrainCortexSpecific datasetDifferencesConnectivity
2018
Dynamic functional connectivity during task performance and rest predicts individual differences in attention across studies
Fong AHC, Yoo K, Rosenberg MD, Zhang S, Li CR, Scheinost D, Constable RT, Chun MM. Dynamic functional connectivity during task performance and rest predicts individual differences in attention across studies. NeuroImage 2018, 188: 14-25. PMID: 30521950, PMCID: PMC6401236, DOI: 10.1016/j.neuroimage.2018.11.057.Peer-Reviewed Original ResearchConceptsAttention task performanceDynamic functional connectivityTask performanceIndividual differencesExecutive control brain networksFunctional connectivityFunctional brain scansAttention performanceTask conditionsAttention scoresBrain networksFMRI dataBrain regionsBetter attentionFC featuresFC matricesDFC matrixPearson's rAttentionIndividualsOne-subjectBrain scansConnectivityConnectomeCross-validation approach
2016
Does prenatal stress alter the developing connectome?
Scheinost D, Sinha R, Cross SN, Kwon SH, Sze G, Constable RT, Ment LR. Does prenatal stress alter the developing connectome? Pediatric Research 2016, 81: 214-226. PMID: 27673421, PMCID: PMC5313513, DOI: 10.1038/pr.2016.197.Peer-Reviewed Original ResearchConceptsAttention deficit hyperactivity disorderDeficit hyperactivity disorderStress-related symptomsPrenatal exposureRisk factorsMajor depressionFetal brainMaternal stressPrenatal stressNeural elementsNeurobehavioral disordersFunctional connectivityHyperactivity disorderHuman neurodevelopmentDisordersAutism spectrum disorderFunctional networksConnectomeSpectrum disorderHuman connectomePregnancySymptomsNeurodevelopmentSchizophreniaBrain