2010
Inference of Population History by Coupling Exploratory and Model-Driven Phylogeographic Analyses
Garrick R, Caccone A, Sunnucks P. Inference of Population History by Coupling Exploratory and Model-Driven Phylogeographic Analyses. International Journal Of Molecular Sciences 2010, 11: 1190-1227. PMID: 20480016, PMCID: PMC2871112, DOI: 10.3390/ijms11041190.Peer-Reviewed Original ResearchConceptsPhylogeographic analysisGene treesGenetic diversityConservation managementPopulation historyDNA sequencesGenetic datasetsGenetic dataCladistic analysisHistorical inferencesPopulation processesTemporal concordanceSynergistic interactionDiversitySpeciationSpatial distributionSequenceGeographic contextTrees
2006
Ancient DNA forces reconsideration of evolutionary history of Mediterranean pygmy elephantids
Poulakakis N, Parmakelis A, Lymberakis P, Mylonas M, Zouros E, Reese D, Glaberman S, Caccone A. Ancient DNA forces reconsideration of evolutionary history of Mediterranean pygmy elephantids. Biology Letters 2006, 2: 451-454. PMID: 17148428, PMCID: PMC1686204, DOI: 10.1098/rsbl.2006.0467.Peer-Reviewed Original ResearchConceptsEvolutionary historyDNA sequencesAncient DNA studiesDNA fragmentsMultiple displacement amplification (MDA) methodPygmy mammothsIndependent historyShort DNA sequencesB-DNA fragmentEastern MediterraneanMediterranean islandsPhylogenetic analysisMolecular dataMainland samplesCretan sampleDNA studiesHistoryElephantidsDiagnostic sitesElephasPrevailing viewIslandsMammothsMammuthusSequence
2005
A rapid loss of stripes: the evolutionary history of the extinct quagga
Leonard J, Rohland N, Glaberman S, Fleischer R, Caccone A, Hofreiter M. A rapid loss of stripes: the evolutionary history of the extinct quagga. Biology Letters 2005, 1: 291-295. PMID: 17148190, PMCID: PMC1617154, DOI: 10.1098/rsbl.2005.0323.Peer-Reviewed Original ResearchConceptsEvolutionary historyDNA sequencesShort mitochondrial DNA sequencesMitochondrial DNA sequencesPlains zebraLittle genetic diversityPleistocene climate changePhylogeographic patternsGenetic diversityHolarctic faunaExtinct quaggaFirst extinct speciesAncient DNAExtinct speciesMuseum skinsGenetic informationQuaggaZebraDNARapid lossGlacial MaximumSequenceClimate changeFaunaSpeciesDevelopment of primers to characterize the mitochondrial control region of Galápagos land and marine iguanas (Conolophus and Amblyrhynchus)
HANLEY T, CACCONE A. Development of primers to characterize the mitochondrial control region of Galápagos land and marine iguanas (Conolophus and Amblyrhynchus). Molecular Ecology Resources 2005, 5: 599-601. DOI: 10.1111/j.1471-8286.2005.01004.x.Peer-Reviewed Original Research
2004
Relict snakes of North America and their relationships within Caenophidia, using likelihood-based Bayesian methods on mitochondrial sequences
Pinou T, Vicario S, Marschner M, Caccone A. Relict snakes of North America and their relationships within Caenophidia, using likelihood-based Bayesian methods on mitochondrial sequences. Molecular Phylogenetics And Evolution 2004, 32: 563-574. PMID: 15223038, DOI: 10.1016/j.ympev.2004.02.005.Peer-Reviewed Original ResearchConceptsNorth American snakesPhylogenetic relationshipsAmerican snakesRibosomal gene sequencesLikelihood-based Bayesian methodsMitochondrial sequencesSnake cladesGene sequencesParallel evolutionHemipenial morphologySnake speciesPutative examplesSnakesNorth AmericaBayesian analysisSequenceCladeDipsadidsDipsadidaeCaenophidiaNatricidaeSpeciesRelictBayesian methods