Incorporating Within-Host Diversity in Phylogenetic Analyses for Detecting Clusters of New HIV Diagnoses
Guang A, Howison M, Ledingham L, D’Antuono M, Chan P, Lawrence C, Dunn C, Kantor R. Incorporating Within-Host Diversity in Phylogenetic Analyses for Detecting Clusters of New HIV Diagnoses. Frontiers In Microbiology 2022, 12: 803190. PMID: 35250908, PMCID: PMC8891961, DOI: 10.3389/fmicb.2021.803190.Peer-Reviewed Original ResearchCluster inferenceNext-generation sequencingPhylogenetic inferencePhylogenetic analysisConsensus sequenceSingle consensus sequenceCluster detectionInferenceConsensus sequence approachHost viral diversitySequence diversitySequence variationGene regionNetwork featuresSummary methodsSequence approachViral diversityConventional approachesDiversity