2015
Transcriptome sequencing and annotation of the polychaete Hermodice carunculata (Annelida, Amphinomidae)
Mehr S, Verdes A, DeSalle R, Sparks J, Pieribone V, Gruber DF. Transcriptome sequencing and annotation of the polychaete Hermodice carunculata (Annelida, Amphinomidae). BMC Genomics 2015, 16: 445. PMID: 26059236, PMCID: PMC4462082, DOI: 10.1186/s12864-015-1565-6.Peer-Reviewed Original ResearchConceptsOpen reading frameAvailable genomic dataHermodice carunculataGenomic dataDe novo transcriptome assemblyNon-model organismsNovo transcriptome assemblyDeep transcriptome sequencingCoral reef ecosystemsGene Ontology termsGene expression profilingKnowledge of reproductionTranscriptome assemblyReef organismsCoral diseasesGene discoveryPhylogenetic positionReef ecosystemsTranscriptome sequencingWestern Atlantic OceanPhylogenetic analysisH. carunculataOntology termsHomology searchImmune response genes
2013
Transcriptome deep-sequencing and clustering of expressed isoforms from Favia corals
Pooyaei Mehr SF, DeSalle R, Kao HT, Narechania A, Han Z, Tchernov D, Pieribone V, Gruber DF. Transcriptome deep-sequencing and clustering of expressed isoforms from Favia corals. BMC Genomics 2013, 14: 546. PMID: 23937070, PMCID: PMC3751062, DOI: 10.1186/1471-2164-14-546.Peer-Reviewed Original ResearchConceptsNematostella vectensisAlgal symbiontsSea anemone Nematostella vectensisDe novo transcriptome assemblyTranscriptomic sequence dataCoral’s algal symbiont