2020
Uncovering axes of variation among single-cell cancer specimens
Chen WS, Zivanovic N, van Dijk D, Wolf G, Bodenmiller B, Krishnaswamy S. Uncovering axes of variation among single-cell cancer specimens. Nature Methods 2020, 17: 302-310. PMID: 31932777, PMCID: PMC7339867, DOI: 10.1038/s41592-019-0689-z.Peer-Reviewed Original ResearchAlgorithmsAnimalsAntineoplastic AgentsBiopsyBreast NeoplasmsCluster AnalysisCytophotometryDrug Screening Assays, AntitumorEnzyme InhibitorsEpithelial-Mesenchymal TransitionFemaleHumansImage Interpretation, Computer-AssistedMammary Neoplasms, AnimalMiceNeoplasm MetastasisPattern Recognition, AutomatedPhenotypeRecombinant ProteinsSingle-Cell AnalysisSoftwareTransforming Growth Factor beta
2018
Recovering Gene Interactions from Single-Cell Data Using Data Diffusion
van Dijk D, Sharma R, Nainys J, Yim K, Kathail P, Carr AJ, Burdziak C, Moon KR, Chaffer CL, Pattabiraman D, Bierie B, Mazutis L, Wolf G, Krishnaswamy S, Pe’er D. Recovering Gene Interactions from Single-Cell Data Using Data Diffusion. Cell 2018, 174: 716-729.e27. PMID: 29961576, PMCID: PMC6771278, DOI: 10.1016/j.cell.2018.05.061.Peer-Reviewed Original Research