Perry Miller, PhD, MD
Professor Emeritus of Biomedical Informatics and Data ScienceCards
About
Titles
Professor Emeritus of Biomedical Informatics and Data Science
Biography
Prof. Miller is the founder and previous Director of the Yale Center for Medical Informatics (YCMI) and of Yale’s Biomedical Informatics research training program. Biomedical Informatics is a discipline at the intersection of biomedicine and the computing and information sciences. The field focuses on the creative application of computers in clinical medicine, biomedical research, and medical education. In clinical medicine, the growing use of computers in patient care, education, and research makes the field increasingly important. In biomedical research, informatics is rapidly becoming a critical component of virtually all bioscience fields. Prof. Miller's research includes major initiatives in clinical, neuro-, and genome informatics, as well as interdisciplinary research at the intersections of these fields.
Appointments
Biomedical Informatics & Data Science
EmeritusPrimary
Other Departments & Organizations
- Biomedical Informatics & Data Science
- High Performance Computation
- NIDA Neuroproteomics Center
- Yale Center for Clinical Investigation (YCCI)
Education & Training
- Affiliated Intern and Resident
- University of Pennsylvania (1981)
- MD
- University of Miami (1978)
- PhD
- Massachusetts Institute of Technology, Computer Science (1973)
- MS
- University of California, Berkeley, EECS (1969)
- AB
- Harvard, Physics and Chemistry (1966)
Research
Publications
2022
SenseLab: Integration of Multidisciplinary Neuroscience Data
Shepherd G, Morse T, Marenco L, Cheung K, Carnevale T, Migliore M, McDougal R, Hines M, Miller P. SenseLab: Integration of Multidisciplinary Neuroscience Data. 2022, 3069-3072. DOI: 10.1007/978-1-0716-1006-0_497.Peer-Reviewed Original Research
2015
Laplacian SVM Based Feature Selection Improves Medical Event Reports Classification
Fodeh S, Miller P, Brandt C, Benin A, Lee K, Koss M. Laplacian SVM Based Feature Selection Improves Medical Event Reports Classification. 2015, 449-454. DOI: 10.1109/icdmw.2015.141.Peer-Reviewed Original ResearchSenseLab: Integration of Multidisciplinary Neuroscience Data
Shepherd G, Morse T, Marenco L, Cheung K, Carnevale T, Migliore M, McDougal R, Hines M, Miller P. SenseLab: Integration of Multidisciplinary Neuroscience Data. 2015, 2655-2657. DOI: 10.1007/978-1-4614-6675-8_497.Peer-Reviewed Original Research
2013
Decision Support and Expert Systems in Public Health
Yasnoff W, Miller P. Decision Support and Expert Systems in Public Health. Health Informatics 2013, 449-467. DOI: 10.1007/978-1-4471-4237-9_23.Peer-Reviewed Original ResearchExpert systemDecision supportDecision support systemSuch systemsWillingness of usersIMM/Computer resourcesSupport systemDevelopment processHealth dataResource managementSound logicExtensive testingSuch supportDevelopersUsersApplicationsSystemVariety of methodsComplexityLogicSupportPublic health practicePublic healthResourcesSenseLab: Integration of Multidisciplinary Neuroscience Data
Shepherd G, Morse T, Marenco L, Cheung K, Carnevale T, Migliore M, McDougal R, Hines M, Miller P. SenseLab: Integration of Multidisciplinary Neuroscience Data. 2013, 1-3. DOI: 10.1007/978-1-4614-7320-6_497-1.Peer-Reviewed Original Research
2008
Issues in the Design of a Pilot Concept-Based Query Interface for the Neuroinformatics Information Framework
Marenco L, Li Y, Martone ME, Sternberg PW, Shepherd GM, Miller PL. Issues in the Design of a Pilot Concept-Based Query Interface for the Neuroinformatics Information Framework. Neuroinformatics 2008, 6: 229-239. PMID: 18953674, PMCID: PMC2664632, DOI: 10.1007/s12021-008-9035-9.Peer-Reviewed Original ResearchConceptsNeuroscience Information FrameworkQuery interfaceBiomedical information retrievalInformation frameworkInformation retrievalResource registryDocument archivesBiomedical vocabulariesSingle interfaceStandardized vocabularyCurrent versionDetailed exampleInterfaceResourcesFrameworkOntologyPilot conceptVocabularyRetrievalIssuesCertain lessonsBackground issuesSearchArchivesPrimary resourcesP1‐141: Modeling the “dendritic hypothesis” of Alzheimer pathogenesis: A neuroinformatics approach for elucidating part of the amyloid beta cascade
Morse T, Mutalik P, Cheung K, Miller P, Shepherd G. P1‐141: Modeling the “dendritic hypothesis” of Alzheimer pathogenesis: A neuroinformatics approach for elucidating part of the amyloid beta cascade. Alzheimer's & Dementia 2008, 4: t248-t248. DOI: 10.1016/j.jalz.2008.05.728.Peer-Reviewed Original Research
2007
YPED: A Web-Accessible Database System for Protein Expression Analysis
Shifman MA, Li Y, Colangelo CM, Stone KL, Wu TL, Cheung KH, Miller PL, Williams KR. YPED: A Web-Accessible Database System for Protein Expression Analysis. Journal Of Proteome Research 2007, 6: 4019-4024. PMID: 17867667, PMCID: PMC3863627, DOI: 10.1021/pr070325f.Peer-Reviewed Original ResearchConceptsWeb-accessible software systemWeb-accessible database systemYale Protein Expression DatabaseOpen source systemsSecure web interfaceSoftware systemsDatabase systemsWeb interfaceSource codeExplorer systemExpression databaseProtein Expression DatabaseSource systemEdu/Sample summariesGel imagesTrans-Proteomic PipelineThe DART classification of unannotated transcription within the ENCODE regions: Associating transcription with known and novel loci
Rozowsky JS, Newburger D, Sayward F, Wu J, Jordan G, Korbel JO, Nagalakshmi U, Yang J, Zheng D, Guigó R, Gingeras TR, Weissman S, Miller P, Snyder M, Gerstein MB. The DART classification of unannotated transcription within the ENCODE regions: Associating transcription with known and novel loci. Genome Research 2007, 17: 732-745. PMID: 17567993, PMCID: PMC1891334, DOI: 10.1101/gr.5696007.Peer-Reviewed Original ResearchEvidence for association between multiple complement pathway genes and AMD
Dinu V, Miller PL, Zhao H. Evidence for association between multiple complement pathway genes and AMD. Genetic Epidemiology 2007, 31: 224-237. PMID: 17266113, DOI: 10.1002/gepi.20204.Peer-Reviewed Original ResearchConceptsSingle nucleotide polymorphismsPathway levelGenome-wide association studiesGenome-wide levelWide association studyGenome levelAdditional genesPathway genesAssociation studiesBiological knowledgeSNP signalsComplement factor HGenotype dataGenesNucleotide polymorphismsForms of AMDComplement pathway genesRisk allelesFactor HMBL2 single-nucleotide polymorphismsIntronsHaplotypesComplement pathwayAllelesPathway
News & Links
News
- November 13, 2008
Yale Gets Grant for Project To Create Software Tools for Neuroscientists
- April 15, 2005
The molecule meets the computer chip
- January 15, 2002
Funding the hunt for proteins
- January 15, 2002
Perry L. Miller, M.D.