2020
Walking Drosophila navigate complex plumes using stochastic decisions biased by the timing of odor encounters
Demir M, Kadakia N, Anderson HD, Clark DA, Emonet T. Walking Drosophila navigate complex plumes using stochastic decisions biased by the timing of odor encounters. ELife 2020, 9: e57524. PMID: 33140723, PMCID: PMC7609052, DOI: 10.7554/elife.57524.Peer-Reviewed Original Research
2014
Adaptability of non-genetic diversity in bacterial chemotaxis
Frankel NW, Pontius W, Dufour YS, Long J, Hernandez-Nunez L, Emonet T. Adaptability of non-genetic diversity in bacterial chemotaxis. ELife 2014, 3: e03526. PMID: 25279698, PMCID: PMC4210811, DOI: 10.7554/elife.03526.Peer-Reviewed Original ResearchConceptsGene regulationNon-genetic diversityBacterial chemotaxis systemHeritable controlChemotaxis systemSelectable traitAdvantageous diversityEnvironmental variationBacterial chemotaxisEnvironmental variabilityClonal populationsDiverse environmentsDiversityE. coliProtein levelsMutationsDifferent environmentsRegulationForagingTraitsColiDiversificationBacteriaColonizationPopulation
2011
Stochastic coordination of multiple actuators reduces latency and improves chemotactic response in bacteria
Sneddon MW, Pontius W, Emonet T. Stochastic coordination of multiple actuators reduces latency and improves chemotactic response in bacteria. Proceedings Of The National Academy Of Sciences Of The United States Of America 2011, 109: 805-810. PMID: 22203971, PMCID: PMC3271881, DOI: 10.1073/pnas.1113706109.Peer-Reviewed Original Research
2010
Efficient modeling, simulation and coarse-graining of biological complexity with NFsim
Sneddon MW, Faeder JR, Emonet T. Efficient modeling, simulation and coarse-graining of biological complexity with NFsim. Nature Methods 2010, 8: 177-183. PMID: 21186362, DOI: 10.1038/nmeth.1546.Peer-Reviewed Original ResearchInterdependence of behavioural variability and response to small stimuli in bacteria
Park H, Pontius W, Guet CC, Marko JF, Emonet T, Cluzel P. Interdependence of behavioural variability and response to small stimuli in bacteria. Nature 2010, 468: 819-823. PMID: 21076396, PMCID: PMC3230254, DOI: 10.1038/nature09551.Peer-Reviewed Original Research
2005
AgentCell: a digital single-cell assay for bacterial chemotaxis
Emonet T, Macal CM, North MJ, Wickersham CE, Cluzel P. AgentCell: a digital single-cell assay for bacterial chemotaxis. Bioinformatics 2005, 21: 2714-2721. PMID: 15774553, DOI: 10.1093/bioinformatics/bti391.Peer-Reviewed Original ResearchConceptsBacterial chemotaxisSingle-cell biologySingle-cell assaysSingle-cell levelChemotaxis networkCellular behaviorBacterial populationsIntracellular processesIndividual cellsSingle cellsSwimming cellsMolecular interactionsChemotaxis assaysBiological systemsNew computational approachCellsComputational approachChemotaxisAssaysFlagellaBiologyBacterium