2022
Single-cell multi-omics reveals dyssynchrony of the innate and adaptive immune system in progressive COVID-19
Unterman A, Sumida TS, Nouri N, Yan X, Zhao AY, Gasque V, Schupp JC, Asashima H, Liu Y, Cosme C, Deng W, Chen M, Raredon MSB, Hoehn KB, Wang G, Wang Z, DeIuliis G, Ravindra NG, Li N, Castaldi C, Wong P, Fournier J, Bermejo S, Sharma L, Casanovas-Massana A, Vogels CBF, Wyllie AL, Grubaugh ND, Melillo A, Meng H, Stein Y, Minasyan M, Mohanty S, Ruff WE, Cohen I, Raddassi K, Niklason L, Ko A, Montgomery R, Farhadian S, Iwasaki A, Shaw A, van Dijk D, Zhao H, Kleinstein S, Hafler D, Kaminski N, Dela Cruz C. Single-cell multi-omics reveals dyssynchrony of the innate and adaptive immune system in progressive COVID-19. Nature Communications 2022, 13: 440. PMID: 35064122, PMCID: PMC8782894, DOI: 10.1038/s41467-021-27716-4.Peer-Reviewed Original ResearchMeSH KeywordsAdaptive ImmunityAgedAntibodies, Monoclonal, HumanizedCD4-Positive T-LymphocytesCD8-Positive T-LymphocytesCells, CulturedCOVID-19COVID-19 Drug TreatmentFemaleGene Expression ProfilingGene Expression RegulationHumansImmunity, InnateMaleReceptors, Antigen, B-CellReceptors, Antigen, T-CellRNA-SeqSARS-CoV-2Single-Cell AnalysisConceptsProgressive COVID-19B cell clonesSingle-cell analysisT cellsImmune responseMulti-omics single-cell analysisCOVID-19Cell clonesAdaptive immune interactionsSevere COVID-19Dynamic immune responsesGene expressionSARS-CoV-2 virusAdaptive immune systemSomatic hypermutation frequenciesCellular effectsProtein markersEffector CD8Immune signaturesProgressive diseaseHypermutation frequencyProgressive courseClassical monocytesClonesImmune interactions
2011
A Comprehensive Analysis of Gene Expression Changes Provoked by Bacterial and Fungal Infection in C. elegans
Engelmann I, Griffon A, Tichit L, Montañana-Sanchis F, Wang G, Reinke V, Waterston RH, Hillier LW, Ewbank JJ. A Comprehensive Analysis of Gene Expression Changes Provoked by Bacterial and Fungal Infection in C. elegans. PLOS ONE 2011, 6: e19055. PMID: 21602919, PMCID: PMC3094335, DOI: 10.1371/journal.pone.0019055.Peer-Reviewed Original ResearchMeSH KeywordsAnimalsBacteriaBacterial InfectionsCaenorhabditis elegansFungiGene Expression RegulationGenomeHost-Pathogen InteractionsImmunity, InnateMycosesSoftwareTranscription, GeneticConceptsC. elegansGenome-wide transcriptional changesFuture functional dissectionGene expression changesInnate immune signalingFunctional dissectionTranscriptional responseAnnotation analysisTranscriptional changesD. coniosporaRNA sequencingFungal pathogensCertain genesExpression changesImmune signalingSmall proteinsStress responseElegansGenesDistinct pathogensBacterial pathogensPathogensPhysiological imbalanceFungal infectionsHost response
2008
A C. elegans Piwi, PRG-1, Regulates 21U-RNAs during Spermatogenesis
Wang G, Reinke V. A C. elegans Piwi, PRG-1, Regulates 21U-RNAs during Spermatogenesis. Current Biology 2008, 18: 861-867. PMID: 18501605, PMCID: PMC2494713, DOI: 10.1016/j.cub.2008.05.009.Peer-Reviewed Original ResearchConceptsPRG-1Small RNAsC. elegansGerm cellsSubset of mRNAsPRG 2Cell totipotencyPIWI proteinsP granulesRibonucleoprotein granulesEpigenetic regulationSpecific family membersGerm linePiwi familyProper expressionPiwiSuccessful spermatogenesisDiverse classPiRNAsRNAElegansProteinSpermatogenesisExpressionFamily members