2024
Constrained Independent Vector Analysis with Reference for Multi-Subject fMRI Analysis
Vu T, Laport F, Yang H, Calhoun V, Adal T. Constrained Independent Vector Analysis with Reference for Multi-Subject fMRI Analysis. IEEE Transactions On Biomedical Engineering 2024, PP: 1-12. PMID: 39042541, DOI: 10.1109/tbme.2024.3432273.Peer-Reviewed Original ResearchIndependent vector analysisIndependent component analysisIVA approachesIndependent vector analysis algorithmMulti-subject functional magnetic resonance imagingHigher-order statistical informationMulti-subject dataSingle-subject mappingModel interferenceMultiple datasetsPrior informationNovel methodStatistical dependenceDatasetSeparation qualityStatistical informationComputational issuesVariable thresholdAlgorithmStatistical diversityModel matchingVector analysisQuality of separationComponent analysisInformationA spatially constrained independent component analysis jointly informed by structural and functional network connectivity
Fouladivanda M, Iraji A, Wu L, van Erp T, Belger A, Hawamdeh F, Pearlson G, Calhoun V. A spatially constrained independent component analysis jointly informed by structural and functional network connectivity. Network Neuroscience 2024, 1-76. DOI: 10.1162/netn_a_00398.Peer-Reviewed Original ResearchIntrinsic connectivity networksFunctional brain connectivityBrain connectivityStructural connectivityFunctional connectivityIndependent component analysisResting-state functional MRIAnalysis of group differencesBrain functional organizationFunctional network connectivityStructural-functional connectivityNeuroimaging studiesFunctional MRIWhole-brain tractographyGroup differencesRs-fMRIBrain disordersFunctional couplingSchizophreniaStatistical analysis of group differencesSubject levelFunctional organizationConnectivity networksBrainDiffusion-weighted MRIDistribution of Connectivity Strengths Across Functional Regions has Higher Entropy in Schizophrenia Patients than in Controls
Maksymchuk N, Miller R, Calhoun V. Distribution of Connectivity Strengths Across Functional Regions has Higher Entropy in Schizophrenia Patients than in Controls. 2024, 00: 37-40. DOI: 10.1109/ssiai59505.2024.10508663.Peer-Reviewed Original ResearchFunctional magnetic resonance imagingGroup independent component analysisSchizophrenia patientsCognitive controlResting-state functional magnetic resonance imagingIntrinsic connectivity networksHealthy controlsGender-matched healthy controlsSZ patientsNeuropsychiatric disordersBrain areasBrain networksSchizophreniaDisrupted integrityBrain domainsConnection strengthIndependent component analysisConnectivity networksMagnetic resonance imagingSomatomotorDistribution of connection strengthsResonance imagingCross-sectional dataPatientsDiagnostic testsSMART (Splitting-Merging Assisted Reliable) Independent Component Analysis for Extracting Accurate Brain Functional Networks
He X, Calhoun V, Du Y. SMART (Splitting-Merging Assisted Reliable) Independent Component Analysis for Extracting Accurate Brain Functional Networks. Neuroscience Bulletin 2024, 40: 905-920. PMID: 38491231, DOI: 10.1007/s12264-024-01184-4.Peer-Reviewed Original ResearchConceptsIndependent component analysisFunctional magnetic resonance imagingClustering independent componentsFunctional networksIndependent component analysis methodMulti-subject fMRI dataIndependent componentsBrain functional networksFMRI dataSubject-specific functional networksFunctional magnetic resonance imaging dataOptimal model orderSmartComponent analysisIntra-Atlas Node Size Effects on Graph Metrics in fMRI Data: Implications for Alzheimer’s Disease and Cognitive Impairment
Kolla S, Falakshahi H, Abrol A, Fu Z, Calhoun V. Intra-Atlas Node Size Effects on Graph Metrics in fMRI Data: Implications for Alzheimer’s Disease and Cognitive Impairment. Sensors 2024, 24: 814. PMID: 38339531, PMCID: PMC10857295, DOI: 10.3390/s24030814.Peer-Reviewed Original ResearchConceptsGraph metricsFunctional network connectivityIndependent component analysisResting state fMRI dataData-driven methodologyNetwork connectivityNovel metricFunctional nodesNode sizeNodesLocal graph metricsMetricsNode dimensionsGraphAlzheimer's diseaseMild cognitive impairmentNetwork neuroscienceNeuroimaging researchNeuroimaging investigationsA Multi-dimensional Joint ICA Model with Gaussian Copula
Agcaoglu O, Silva R, Alacam D, Calhoun V. A Multi-dimensional Joint ICA Model with Gaussian Copula. Lecture Notes In Computer Science 2024, 14366: 152-163. DOI: 10.1007/978-3-031-51026-7_14.Peer-Reviewed Original ResearchIndependent component analysisBivariate distributionMarginal distributionsGaussian copulaLogistic distributionJoint ICAImage data miningSuper-Gaussian distributionImage datasetsFunctional magnetic resonance imaging datasetsInfomax principleAlzheimer's Disease Neuroimaging InitiativeProposed algorithmData miningIdentical marginalsMagnetic resonance imaging datasetICA modelMultimodal versionICA methodJoint independent component analysisCopulasDatasetMaximum likelihoodMixing matrixNeuroimaging data
2023
F71. NETWORK OF CO-METHYLATION ASSOCIATED WITH GREY MATTER MATURATION IN HUMAN ADOLESCENCE
Jensen D, Chen J, Turner J, Stephen J, Wang Y, Wilson T, Calhoun V, Liu J. F71. NETWORK OF CO-METHYLATION ASSOCIATED WITH GREY MATTER MATURATION IN HUMAN ADOLESCENCE. European Neuropsychopharmacology 2023, 75: s258-s259. DOI: 10.1016/j.euroneuro.2023.08.455.Peer-Reviewed Original ResearchStructural MRIBrain maturationNeuronal systemsCo-methylation network analysisPeriod of brain maturationAdolescent brain developmentAdolescent brain maturationPhases of neurodevelopmentIndependent component analysisGray matterHuman brain structureGM maturationDNAm changesCo-methylation modulesPrefrontal cortexExecutive functionFrontal poleGM volumeTime pointsSubjects aged 9Brain structuresCpG sitesSynaptic pruningBrain developmentDNA methylationPsychopathic traits and altered resting-state functional connectivity in incarcerated adolescent girls
Allen C, Maurer J, Gullapalli A, Edwards B, Aharoni E, Harenski C, Anderson N, Harenski K, Calhoun V, Kiehl K. Psychopathic traits and altered resting-state functional connectivity in incarcerated adolescent girls. Frontiers In Neuroimaging 2023, 2: 1216494. PMID: 37554634, PMCID: PMC10406221, DOI: 10.3389/fnimg.2023.1216494.Peer-Reviewed Original ResearchAmplitude of low-frequency fluctuationPsychopathic traitsResting-state networksLow-frequency fluctuationsAssociation of psychopathic traitsCorrelates of psychopathic traitsIncarcerated adolescent girlsResting-state fMRI scansResting-state functional connectivityElevated psychopathic traitsCognitive control networkGroup independent component analysisMode network componentsInter-network connectivityIntra-network connectivityHigh-risk adolescent girlsIndependent component analysisResting-state measuresFunctional network propertiesAdolescent girlsFMRI scanningParalimbic regionsMode networkIncarcerated boysFunctional connectivityDecentralized Parallel Independent Component Analysis for Multimodal, Multisite Data
Panichvatana C, Chen J, Baker B, Thapaliya B, Calhoun V, Liu J. Decentralized Parallel Independent Component Analysis for Multimodal, Multisite Data. Annual International Conference Of The IEEE Engineering In Medicine And Biology Society (EMBC) 2023, 00: 1-4. PMID: 38083130, DOI: 10.1109/embc40787.2023.10340070.Peer-Reviewed Original ResearchConceptsParallel independent component analysisParallel ICAStudy of mental healthIndependent component analysisGenetic dataOmics dataGenetic componentBrain abnormalitiesConstrained Independent Component Analysis Based on Entropy Bound Minimization for Subgroup Identification from Multi-subject fMRI Data
Yang H, Ghayem F, Gabrielson B, Akhonda M, Calhoun V, Adali T. Constrained Independent Component Analysis Based on Entropy Bound Minimization for Subgroup Identification from Multi-subject fMRI Data. 2023, 00: 1-5. DOI: 10.1109/icassp49357.2023.10095816.Peer-Reviewed Original ResearchIndependent vector analysisSynthetic dataConstrained independent component analysisEntropy bound minimizationComputational complexity limitationsDemixing matrixIndependent component analysisComputational costOrthogonality requirementData identificationAlgorithmFunctional networksNetworkComponent analysisDatasetFMRI dataComputerTaskEntropyOrthogonalitySubgroup identificationVector analysisBrain networksDensity modelNew Interpretable Patterns and Discriminative Features from Brain Functional Network Connectivity using Dictionary Learning
Ghayem F, Yang H, Kantar F, Kim S, Calhoun V, Adali T. New Interpretable Patterns and Discriminative Features from Brain Functional Network Connectivity using Dictionary Learning. 2023, 00: 1-5. DOI: 10.1109/icassp49357.2023.10096473.Peer-Reviewed Original ResearchDictionary learningIndependent component analysisLearned atomsDiscovery of hidden informationNetwork connectivityMulti-subject functional magnetic resonance imagingFunctional magnetic resonance imagingFunctional network connectivityDiscriminative featuresFeature vectorHidden informationEffective classificationSZ groupHealthy controlsResting-state fMRI dataExperimental resultsICA resultsDictionaryBrain functional network connectivityBrain networksMental disordersFMRI dataLearningRepresentationMental diseasesAging brain shows joint declines in brain within-network connectivity and between-network connectivity: a large-sample study (N > 6,000)
Du Y, Guo Y, Calhoun V. Aging brain shows joint declines in brain within-network connectivity and between-network connectivity: a large-sample study (N > 6,000). Frontiers In Aging Neuroscience 2023, 15: 1159054. PMID: 37273655, PMCID: PMC10233064, DOI: 10.3389/fnagi.2023.1159054.Peer-Reviewed Original ResearchFunctional network connectivityWithin-network connectivityCognitive control networkFunctional networksIncreased within-network connectivityDecreased within-network connectivityWhole-brain functional networksControl networkReduced functional network connectivityBetween-network connectivityWhole-brain levelNon-pathological agingSub-cortical networksIndependent component analysisBrain functional networksMode networkAging-related changesSensorimotor networkNeuroimaging dataConnectivity declineVisual networkWhole-brainBrain agingAging brainEffects of ageGroup independent components underpin responses to items from a depression scale.
Stoyanov D, Khorev V, Paunova R, Kandilarova S, Kurkin S, Calhoun V. Group independent components underpin responses to items from a depression scale. Acta Neuropsychiatrica 2023, 36: 9-16. PMID: 37088536, DOI: 10.1017/neu.2023.22.Peer-Reviewed Original ResearchConceptsFunctional magnetic resonance imagingGroup independent component analysisSelf-evaluation scaleFrontal gyrusCingulate cortexDepression ScaleRight superior frontal gyrusFunctional magnetic resonance imaging acquisitionHealthy controlsRight middle cingulate cortexAnterior cingulate cortexMiddle frontal gyrusSuperior frontal gyrusMiddle cingulate cortexIndependent component analysisGroup independent componentStatistical parametric mappingDepressive disorderDepressive episodeBrain circuitsBrain networksNeural network patternsDiagnostic conditionsParametric mappingGyrusAny-Way Independent Component Analysis with Reference
Duan K, Silva R, Liu J, Agcaoglu O, Calhoun V. Any-Way Independent Component Analysis with Reference. 2023, 00: 1-4. DOI: 10.1109/isbi53787.2023.10230369.Peer-Reviewed Original ResearchCross-modal correlationIndependent component analysisMultiset canonical correlation analysisOptimal global solutionMultimodal fusionNoisy conditionsOrthogonality requirementCanonical correlation analysisIndependence of sourcesJoint independent component analysisSimulation resultsComponent analysisImproved accuracyComponent matricesGlobal solutionICAMultisetsMultimodal patternsOrthogonalityTopological Characteristics of 5d Spatially Dynamic Brain Networks in Schizophrenia
Salman M, Iraji A, Lewis N, Calhoun V. Topological Characteristics of 5d Spatially Dynamic Brain Networks in Schizophrenia. 2023, 00: 1-5. DOI: 10.1109/isbi53787.2023.10230513.Peer-Reviewed Original ResearchFunctional magnetic resonance imagingSchizophrenia patientsIntrinsic connectivity networksFMRI dataIndependent component analysisResting-state fMRI studiesAnalysis of fMRI dataSpatial independent component analysisHuman brain functionDynamic brain networksFMRI studyBrain networksBrain functionAberrant behaviorBrain disordersBrain statesSchizophreniaConnectivity networksMagnetic resonance imagingMulti-subject fMRI dataData-driven analysisResonance imagingDynamics of controlSpatial activityDisordersSymmetric data-driven fusion of diffusion tensor MRI: Age differences in white matter
Colmenares A, Hefner M, Calhoun V, Salerno E, Fanning J, Gothe N, McAuley E, Kramer A, Burzynska A. Symmetric data-driven fusion of diffusion tensor MRI: Age differences in white matter. Frontiers In Neurology 2023, 14: 1094313. PMID: 37139071, PMCID: PMC10149813, DOI: 10.3389/fneur.2023.1094313.Peer-Reviewed Original ResearchDiffusion tensor imagingAge differencesExamination of age differencesPattern of age differencesFractional anisotropyRadial diffusivityJoint independent component analysisCognitively healthy adultsWhite matterDiffusion tensor imaging parametersFluid abilitiesPrefrontal WMProcessing speedDiagnostic classificationWM pathologyDiffusion tensor imaging datasetsAging WMUnimodal analysisTensor imagingIndependent component analysisClinical samplesHealthy agingCognitionCorpus callosumHealthy adultsData-driven multimodal fusion: approaches and applications in psychiatric research
Sui J, Zhi D, Calhoun V. Data-driven multimodal fusion: approaches and applications in psychiatric research. Psychoradiology 2023, 3: kkad026. PMID: 38143530, PMCID: PMC10734907, DOI: 10.1093/psyrad/kkad026.Peer-Reviewed Original ResearchMultimodal fusionFusion methodBig dataMulti-modal fusion methodMulti-modal fusion techniquesImage fusion applicationsEra of big dataMultimodal fusion approachDeep learning approachExtract meaningful insightsIndependent component analysisFusion approachHidden patternsLearning approachFusion techniqueCanonical correlation analysisPrior informationMultiple modalitiesComplex psychiatric disorderN-wayMeaningful insightsJoint Structural and Functional Connectivity Learning Based Independent Component Analysis
Fouladivanda M, Iraji A, Wu L, Calhoun V. Joint Structural and Functional Connectivity Learning Based Independent Component Analysis. 2023, 00: 1-5. DOI: 10.1109/mlsp55844.2023.10285932.Peer-Reviewed Original ResearchJoint learning procedureIndependent component analysisFunctional connectivity informationData-driven approachLearning procedureConnectivity informationICA approachMultiple modalitiesComplementary informationComponent analysisBrain network analysisIntrinsic connectivity networksJoint approachConnectivity networksInformationIncreasing developmentDatasetBrain's intrinsic connectivity networksNetworkNetwork analysisSensitive to group differences