A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology
Rambaut A, Holmes E, O’Toole Á, Hill V, McCrone J, Ruis C, du Plessis L, Pybus O. A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology. Nature Microbiology 2020, 5: 1403-1407. PMID: 32669681, PMCID: PMC7610519, DOI: 10.1038/s41564-020-0770-5.Peer-Reviewed Original ResearchConceptsDiversity of SARS-CoV-2Virus lineagesVirus genome sequencesSARS-CoV-2 lineagesPhylogenetic frameworkGenome sequencePhylogenetic diversityGlobal spread of SARS-CoV-2Nomenclatural proposalsGenomic epidemiologyVirus nomenclatureSARS-CoV-2LineagesLineage labelingHuman coronavirusesGlobal spreadNomenclatureSequenceSpread of SARS-CoV-2VirusGenomic Epidemiology of SARS-CoV-2 in Guangdong Province, China
Lu J, du Plessis L, Liu Z, Hill V, Kang M, Lin H, Sun J, François S, Kraemer M, Faria N, McCrone J, Peng J, Xiong Q, Yuan R, Zeng L, Zhou P, Liang C, Yi L, Liu J, Xiao J, Hu J, Liu T, Ma W, Li W, Su J, Zheng H, Peng B, Fang S, Su W, Li K, Sun R, Bai R, Tang X, Liang M, Quick J, Song T, Rambaut A, Loman N, Raghwani J, Pybus O, Ke C. Genomic Epidemiology of SARS-CoV-2 in Guangdong Province, China. Cell 2020, 181: 997-1003.e9. PMID: 32359424, PMCID: PMC7192124, DOI: 10.1016/j.cell.2020.04.023.Peer-Reviewed Original ResearchConceptsGenetic diversity of SARS-CoV-2Combination of metagenomic sequencingDiversity of SARS-CoV-2Genomic epidemiology of SARS-CoV-2Genetic diversityAmplicon approachPhylogenetic analysisMetagenomic sequencingPhylogenetic clusteringChina’s most populous province,Genetic variationEpidemiology of SARS-CoV-2Genomic epidemiologyIndependent introductionsSARS-CoV-2Molecular epidemiologyMolecular surveillanceGenomeLocal transmission chainsTransmission chainCentral ChinaSequenceSARS-CoV-2 infectionGuangdong Province