2024
Circulating microRNAs associated with bronchodilator response in childhood asthma.
Sharma R, Tiwari A, Kho AT, Wang AL, Srivastava U, Piparia S, Desai B, Wong R, Celedón JC, Peters SP, Smith LJ, Irvin CG, Castro M, Weiss ST, Tantisira KG, McGeachie MJ. Circulating microRNAs associated with bronchodilator response in childhood asthma. BMC Pulm Med 2024, 24: 553. PMID: 39497092, DOI: 10.1186/s12890-024-03372-4.Peer-Reviewed Original ResearchMiR-107 and Its Association With House Dust Mite Sensitisation: Implications for Asthma.
Kim BK, Yang MS, Srivastava U, Piparia S, Sharma R, Tiwari A, Kho A, Wong R, Celedón JC, Weiss ST, McGeachie M, Tantisira K. MiR-107 and Its Association With House Dust Mite Sensitisation: Implications for Asthma. Clin Exp Allergy 2024 PMID: 39489493, DOI: 10.1111/cea.14590.Peer-Reviewed Original ResearchMiR-107 and Its Association With House Dust Mite Sensitisation: Implications for Asthma
Byung-Keun Kim, Min-Suk Yang, Upasna Srivastava, Shraddha Piparia, Rinku Sharma, Anshul Tiwari, Alvin Kho, Richard Wong, Juan C. Celedón, Scott T. Weiss, Michael McGeachie, Kelan TantisiraPeer-Reviewed Original ResearchEnhancing Asthma Pharmacogenetics Through Subtype-Specific Associations.
Piparia S, Hecker J, Srivastava U, Sharma R, Khare M, Kho A, Weiss ST, McGeachie M, Tantisira K. Enhancing Asthma Pharmacogenetics Through Subtype-Specific Associations. Clin Exp Allergy 2024 PMID: 39357540, DOI: 10.1111/cea.14573.Peer-Reviewed Original ResearchIdentification of MicroRNAs in children with increased asthma bronchodilator usage in genetics of asthma in Costa Rica Study
Identification of MicroRNAs in children with increased asthma bronchodilator usage in genetics of asthma in costa rica study. Pediatric pulmonology. ;0(0). doi: 10.1002/ppul.27236.Peer-Reviewed Original ResearchComputational Omics Protocol for the Comparative Study of Microbiome Analysis
Srivastava, U., Kesheri, M., Kanchan, S., Singh, S. (2024). Computational Omics Protocol for the Comparative Study of Microbiome Analysis. In: Kesheri, M., Kanchan, S., Salisbury, T.B., Sinha, R.P. (eds) Microbial Omics in Environment and Health. Springer, Singapore. https://doi.org/10.1007/978-981-97-1769-9_5Peer-Reviewed Original ResearchPeculiar Endosymbiosis in the Cyanobiont Nostoc azollae 0708: An In Silico Approach
Minu Kesheri, Swarna Kanchan, Amit Kumar, Upasna Srivastava et al., (2024). Peculiar Endosymbiosis in the Cyanobiont Nostoc azollae 0708: An In Silico Approach. In: Kesheri, M., Kanchan, S., Salisbury, T.B., Sinha, R.P. (eds) Microbial Omics in Environment and Health. Springer, Singapore. https://doi.org/10.1007/978-981-97-1769-9_13Peer-Reviewed Original Research In PressIntegrative omics data mining: Challenges and opportunities
Swarna Kanchan, Minu Kesheri, Upasna Srivastava, Hiren Karathia, Ratnaprabha Ratna-Raj, Bhaskar Chittoori, Lydia Bogomolnaya, Rajeshwar P. Sinha, James Denvir (2024) Integrative omics data mining: Challenges and opportunities, Integrative Omics,Peer-Reviewed Original ResearchEcology and environmental omics
Minu Kesheri, Swarna Kanchan, Upasna Srivastava, Bhaskar Chittoori, Ratnaprabha Ratna-Raj, Rajeshwar P. Sinha, Akhouri Vaishampayan, Rajesh P. Rastogi, Donald A. Primeran (2024) Ecology and environmental omics, Integrative Omics Concept, Methodology, and Application.Peer-Reviewed Original Research In PressTypes of Omics Data: Genomics, Metagenomics, Epigenomics, Transcriptomics, Proteomics, Metabolomics and Phenomics
Upasna Srivastava et al. "Types of Omics Data: Genomics, Metagenomics, Epigenomics, Transcriptomics, Proteomics, Metabolomics and Phenomics”, Integrative Omics: Concept, Methodology and ApplicationChaptersIntegrative omics approaches for identification of biomarkers
Upasna Srivastava et al. “Integrative Omics Approaches for Identification of Biomarkers and its correlated pathways”. Integrative Omics: Concept, Methodology and Application’ .ChaptersPaneth-like cells produced from OLFM4+ stem cells support OLFM4+ stem cell growth in advanced colorectal cancer
Sakahara, M., Okamoto, T., Srivastava, U. et al. Paneth-like cells produced from OLFM4+ stem cells support OLFM4+ stem cell growth in advanced colorectal cancer. Commun Biol 7, 27 (2024). https://doi.org/10.1038/s42003-023-05504-8Peer-Reviewed Original Research
2023
Nutrimetabolomics: Metabolomics in nutrition research”. Metabolomics: Recent Advances and Future Applications
Srivastava, U., Kanchan, S., Kesheri, M., Singh, S. (2023). Nutrimetabolomics: Metabolomics in Nutrition Research. In: Soni, V., Hartman, T.E. (eds) Metabolomics. Springer, Cham. https://doi.org/10.1007/978-3-031-39094-4_8Chapters
2022
Approaches of Single-Cell Analysis in Crop Improvement
Srivastava, U., Singh, S. (2022). Approaches of Single-Cell Analysis in Crop Improvement. In: Wani, S.H., Kumar, A. (eds) Genomics of Cereal Crops. Springer Protocols Handbooks. Humana, New York, NY.Chapters
2021
Comparative Analysis of Patient-Matched PDOs Revealed a Reduction in OLFM4-Associated Clusters in Metastatic Lesions in Colorectal Cancer.
Okamoto T, duVerle D, Yaginuma K, Natsume Y, Yamanaka H, Kusama D, Fukuda M, Yamamoto M, Perraudeau F, Srivastava U, Kashima Y, Suzuki A, Kuze Y, Takahashi Y, Ueno M, Sakai Y, Noda T, Tsuda K, Suzuki Y, Nagayama S, Yao R. Comparative Analysis of Patient-Matched PDOs Revealed a Reduction in OLFM4-Associated Clusters in Metastatic Lesions in Colorectal Cancer. Stem Cell Reports 2021, 16: 954-967. PMID: 33711267, DOI: 10.1016/j.stemcr.2021.02.012.Peer-Reviewed Original Research
2019
Circulating MicroRNAs associated with Bronchodilator Response in Childhood Asthma
Rinku Sharma, Anshul Tiwari, Alvin T Kho et al, Upasna Srivastava et al. Circulating MicroRNAs associated with Bronchodilator Response in Childhood Asthma, 29 June 2023, PREPRINT (Version 1) available at Research Square [https://doi.org/10.21203/rs.3.rs-3101724/v1]Peer-Reviewed Original Research
2017
Linear epitope prediction in HPV type 16 E7 antigen and their docked interaction with human TMEM 50A structural model.
Srivastava U, Singh S, Gautam B, Yadav P, Yadav M, Thomas G, Singh G. Linear epitope prediction in HPV type 16 E7 antigen and their docked interaction with human TMEM 50A structural model. Bioinformation 2017, 13: 122-130. PMID: 28690376, DOI: 10.6026/97320630013122.Peer-Reviewed Original Research
2013
Molecular modeling, dynamics studies and virtual screening of Fructose 1, 6 biphosphate aldolase-II in community acquired- methicillin resistant Staphylococcus aureus (CA-MRSA).
Yadav PK, Singh G, Gautam B, Singh S, Yadav M, Srivastav U, Singh B. Molecular modeling, dynamics studies and virtual screening of Fructose 1, 6 biphosphate aldolase-II in community acquired- methicillin resistant Staphylococcus aureus (CA-MRSA). Bioinformation 2013, 9: 158-64. PMID: 23423142, DOI: 10.6026/97320630009158.Peer-Reviewed Original ResearchProteomics and Sequence Analysis for HPV type 16 E7 Protein Expressed in Cervical Cancer
Srivastava, U. & Singh, G. & Thomas, George. (2013). Proteomics and sequence analysis for HPV type 16 E7 protein expressed in cervical cancer. International Journal of Bioinformatics and Biological Science. 1. 247-261.Peer-Reviewed Original ResearchComparative Homology Modelling for HPV Type 16 E 7 Proteins by using MODELLER and its Validations with SAVS and ProSA Web Server
Srivastava, U and Singh, G. (2013). Comparative Homology Modeling for HPV Type 16 E7 Proteins by using MODELLER and its Validation with SAVS and ProSA Web Server. Journal of Computational Intelligence in Bioinformatics, 6:27-33. Doi: https://dx.doi.org/10.37622/JCIB/6.1.2013.27-33.Peer-Reviewed Original Research