2007
YPED: A Web-Accessible Database System for Protein Expression Analysis
Shifman MA, Li Y, Colangelo CM, Stone KL, Wu TL, Cheung KH, Miller PL, Williams KR. YPED: A Web-Accessible Database System for Protein Expression Analysis. Journal Of Proteome Research 2007, 6: 4019-4024. PMID: 17867667, PMCID: PMC3863627, DOI: 10.1021/pr070325f.Peer-Reviewed Original ResearchConceptsWeb-accessible software systemWeb-accessible database systemYale Protein Expression DatabaseOpen source systemsSecure web interfaceSoftware systemsDatabase systemsWeb interfaceSource codeExplorer systemExpression databaseProtein Expression DatabaseSource systemEdu/Sample summariesGel imagesTrans-Proteomic Pipeline
2001
Global Analysis of Protein Activities Using Proteome Chips
Zhu H, Bilgin M, Bangham R, Hall D, Casamayor A, Bertone P, Lan N, Jansen R, Bidlingmaier S, Houfek T, Mitchell T, Miller P, Dean R, Gerstein M, Snyder M. Global Analysis of Protein Activities Using Proteome Chips. Science 2001, 293: 2101-2105. PMID: 11474067, DOI: 10.1126/science.1062191.Peer-Reviewed Original ResearchMeSH KeywordsAmino Acid MotifsAmino Acid SequenceCalmodulinCalmodulin-Binding ProteinsCell MembraneCloning, MolecularFungal ProteinsGlucoseLiposomesMembrane ProteinsMolecular Sequence DataOpen Reading FramesPeptide LibraryPhosphatidylcholinesPhosphatidylinositolsPhospholipidsProtein BindingProteomeRecombinant Fusion ProteinsSaccharomyces cerevisiaeSignal TransductionStreptavidinConceptsYeast proteome microarraysDiverse biochemical activitiesOpen reading framePotential binding motifsProtein-drug interactionsEukaryotic proteomesYeast proteomeProteome chipsPosttranslational modificationsReading frameCorresponding proteinNew calmodulinProtein activityBinding motifBiochemical activityProteome microarrayProteinProteomeMicroarrayCalmodulinGlobal analysisMotifPhospholipidsActivity