2021
BrainIAK: The Brain Imaging Analysis Kit
Kumar M, Anderson M, Antony J, Baldassano C, Brooks P, Cai M, Chen P, Ellis C, Henselman-Petrusek G, Huberdeau D, Hutchinson J, Li Y, Lu Q, Manning J, Mennen A, Nastase S, Richard H, Schapiro A, Schuck N, Shvartsman M, Sundaram N, Suo D, Turek J, Turner D, Vo V, Wallace G, Wang Y, Williams J, Zhang H, Zhu X, Capotă M, Cohen J, Hasson U, Li K, Ramadge P, Turk-Browne N, Willke T, Norman K. BrainIAK: The Brain Imaging Analysis Kit. Aperture Neuro 2021, 1: 10.52294/31bb5b68-2184-411b-8c00-a1dacb61e1da. PMID: 35939268, PMCID: PMC9351935, DOI: 10.52294/31bb5b68-2184-411b-8c00-a1dacb61e1da.Peer-Reviewed Original ResearchHigh-performance compute clusterData analysis problemsCompute clustersData simulatorJupyter notebooksComputational innovationsPython packageSame codeReal dataAnalysis problemKey problemReal-time functional magnetic resonance imagingMarkov modelEvent segmentationAforementioned techniquesAnalysis techniquesSimilarity analysisSegmentationLaptopBayesian versionFunctional alignmentSimulatorTechniqueRepresentational similarity analysisVariety of techniquesChapter 5 Studying episodic memory using real-time fMRI
Wammes J, Lin Q, Norman K, Turk-Browne N. Chapter 5 Studying episodic memory using real-time fMRI. 2021, 107-130. DOI: 10.1016/b978-0-12-822421-2.00011-9.ChaptersEpisodic memoryReal-time functional magnetic resonance imagingFunctional magnetic resonance imagingLong-term memoryReal-time fMRIUnique theoretical insightsHuman memoryNeural mechanismsCognitive functionBrain statesRtfMRIMemoryCorrelational approachIndividual experiencesHuman brainFuture researchMagnetic resonance imagingEmotionsTheoretical insightsFMRICausal relationshipNascent fieldExperienceEncodingPerception
2016
Real-Time Full Correlation Matrix Analysis of fMRI Data
Wang Y, Keller B, Capotă M, Anderson M, Sundaram N, Cohen J, Lit K, Turk-Browne N, Willke T. Real-Time Full Correlation Matrix Analysis of fMRI Data. 2016, 1242-1251. DOI: 10.1109/bigdata.2016.7840728.Peer-Reviewed Original ResearchReal-time classificationReal-time dataData velocityFeature selectionIncremental feature selectionComputational challengesOffline analysis methodsReal-time functional magnetic resonance imagingSame accuracyAnalysis methodWorkflowMachineAlgorithmModel updatingFMRI dataSystemImplementationClassificationUpdatingToolboxAccuracyHuman brainProcessingMatrix analysisStreams