2022
RT-Cloud: A cloud-based software framework to simplify and standardize real-time fMRI
Wallace G, Polcyn S, Brooks P, Mennen A, Zhao K, Scotti P, Michelmann S, Li K, Turk-Browne N, Cohen J, Norman K. RT-Cloud: A cloud-based software framework to simplify and standardize real-time fMRI. NeuroImage 2022, 257: 119295. PMID: 35580808, PMCID: PMC9494277, DOI: 10.1016/j.neuroimage.2022.119295.Peer-Reviewed Original ResearchConceptsCloud computingOpen-source Python software packageHigh-performance computingStandardized data formatsBrain Imaging Data Structure (BIDS) standardPython software packageData structure standardsSoftware frameworkOpen standardsData formatLack of standardsHardware requirementsComputingReal timeSoftware packageOpen scienceReal-time fMRIScalabilityTechnical expertiseExecutionDeploymentApplicationsStructure standardsComplexityFormat
2020
BrainIAK tutorials: User-friendly learning materials for advanced fMRI analysis
Kumar M, Ellis CT, Lu Q, Zhang H, Capotă M, Willke TL, Ramadge PJ, Turk-Browne NB, Norman KA. BrainIAK tutorials: User-friendly learning materials for advanced fMRI analysis. PLOS Computational Biology 2020, 16: e1007549. PMID: 31940340, PMCID: PMC6961866, DOI: 10.1371/journal.pcbi.1007549.Peer-Reviewed Original ResearchConceptsOpen-source Python software packageHigh-performance computing clusterNew programming languageOpen source softwareMachine-learning methodsPython software packageHigh-dimensional fMRI dataComputing clusterFile handlingMachine learningProgramming languageNovice usersDifferent softwareLarge memoryPython packageCustom codeSoftware packageSteep learning curveAdvanced toolsEfficient techniqueMarkov modelEvent segmentationReal-time fMRIAnalysis packageSoftware