2016
PathScore: a web tool for identifying altered pathways in cancer data
Gaffney SG, Townsend JP. PathScore: a web tool for identifying altered pathways in cancer data. Bioinformatics 2016, 32: 3688-3690. PMID: 27503224, DOI: 10.1093/bioinformatics/btw512.Peer-Reviewed Original Research
2013
AuthorReward: increasing community curation in biological knowledge wikis through automated authorship quantification
Dai L, Tian M, Wu J, Xiao J, Wang X, Townsend JP, Zhang Z. AuthorReward: increasing community curation in biological knowledge wikis through automated authorship quantification. Bioinformatics 2013, 29: 1837-1839. PMID: 23732274, PMCID: PMC3702255, DOI: 10.1093/bioinformatics/btt284.Peer-Reviewed Original Research
2009
The filamentous fungal gene expression database (FFGED)
Zhang Z, Townsend JP. The filamentous fungal gene expression database (FFGED). Fungal Genetics And Biology 2009, 47: 199-204. PMID: 20025988, PMCID: PMC2822089, DOI: 10.1016/j.fgb.2009.12.001.Peer-Reviewed Original ResearchMeSH KeywordsAlgorithmsChromosome MappingComputational BiologyComputer GraphicsDatabase Management SystemsDatabases, GeneticGene ExpressionGene Expression ProfilingGene Expression Regulation, FungalGenes, FungalGenome, FungalInternetModels, GeneticModels, StatisticalOligonucleotide Array Sequence AnalysisSaccharomyces cerevisiaeSequence AlignmentSoftwareSystems IntegrationUser-Computer InterfaceConceptsEfficient web interfaceExpression databaseUser-friendly managementCollection of toolsGene expression databaseDifferent usersData sharingWeb interfaceCollaborative platformExperimental metadataFree databaseRaw dataData submissionUsersMultiple experimentsGene expression dataSharingDatabaseEssential informationAjaxMetadataExpression dataDifferent experimentsRetrievalRelated experiments
2008
Bringing Web 2.0 to bioinformatics
Zhang Z, Cheung KH, Townsend JP. Bringing Web 2.0 to bioinformatics. Briefings In Bioinformatics 2008, 10: 1-10. PMID: 18842678, PMCID: PMC2638627, DOI: 10.1093/bib/bbn041.Peer-Reviewed Reviews, Practice Guidelines, Standards, and Consensus StatementsConceptsData exchangeWeb 2.0Data integrationHeterogeneous data sourcesHarness collective intelligenceSharing of dataWeb 2.0 technologiesIntegration of dataMajor bioinformatics challengeWeb servicesData warehousingData creationData sharingCollaborative platformCollective intelligenceAutomatic analysisCommunication modelInformation technologyBioinformatics researchUsersData sourcesSharingMultiple sourcesBioinformatics challengesPlatformHCLS 2.0/3.0: Health care and life sciences data mashup using Web 2.0/3.0
Cheung KH, Yip KY, Townsend JP, Scotch M. HCLS 2.0/3.0: Health care and life sciences data mashup using Web 2.0/3.0. Journal Of Biomedical Informatics 2008, 41: 694-705. PMID: 18487092, PMCID: PMC2933816, DOI: 10.1016/j.jbi.2008.04.001.Peer-Reviewed Reviews, Practice Guidelines, Standards, and Consensus StatementsMeSH KeywordsBiological Science DisciplinesDatabase Management SystemsDelivery of Health CareEnvironmental PollutionGeographic Information SystemsHumansHypermediaInformation DisseminationInformation Storage and RetrievalInterdisciplinary CommunicationInternetNatural Language ProcessingNeoplasmsOligonucleotide Array Sequence AnalysisPublic Health InformaticsSoftware DesignSystems IntegrationUser-Computer InterfaceConceptsData mashupSemantic WebWeb 2.0Google MapsData integration tasksWeb 3.0 technologiesInformation system interfaceLife science domainWeb 2.0 technologiesWeb 2.0 toolsSet of technologiesGeographic information system interfaceMashup technologySemantic mashupWeb 2.0/3.0Data integrationMashupsSystem interfaceScience domainIntegration taskYahooHealth dataPublic health dataWebMicroarray research