2017
Information retrieval for biomedical datasets: the 2016 bioCADDIE dataset retrieval challenge
Roberts K, Gururaj A, Chen X, Pournejati S, Hersh W, Demner-Fushman D, Ohno-Machado L, Cohen T, Xu H. Information retrieval for biomedical datasets: the 2016 bioCADDIE dataset retrieval challenge. Database 2017, 2017: bax068. DOI: 10.1093/database/bax068.Peer-Reviewed Original ResearchBiomedical datasetsRetrieval challengesInformation retrieval techniquesAdvanced query processingBiomedical data repositoriesAdvanced retrieval methodsQuery processingInformation retrievalTest queriesRetrieval systemRank frameworkRetrieval approachRetrieval techniquesData repositoryRetrieval methodTop precisionDatasetQueriesRepositoryChallengesRetrievalTaskLearningSystemCorpus
2007
Gene symbol disambiguation using knowledge-based profiles
Xu H, Fan J, Hripcsak G, Mendonça E, Markatou M, Friedman C. Gene symbol disambiguation using knowledge-based profiles. Bioinformatics 2007, 23: 1015-1022. PMID: 17314123, DOI: 10.1093/bioinformatics/btm056.Peer-Reviewed Original ResearchConceptsKnowledge sourcesSimilarity scoresInformation retrieval methodsGene symbol disambiguationText mining systemKnowledge-based profilesTesting data setsBiomedical entitiesBiomedical domainMEDLINE abstractsHigh similarity scoresRetrieval methodAmbiguous genesEntrez GeneGene symbolsDisambiguation taskTesting set