2017
Introduction: the International Conference on Intelligent Biology and Medicine (ICIBM) 2016: special focus on medical informatics and big data
Tao C, Gong Y, Xu H, Zhao Z. Introduction: the International Conference on Intelligent Biology and Medicine (ICIBM) 2016: special focus on medical informatics and big data. BMC Medical Informatics And Decision Making 2017, 17: 77. PMID: 28699553, PMCID: PMC5506607, DOI: 10.1186/s12911-017-0462-0.Peer-Reviewed Original ResearchConceptsIntelligent BiologyBig dataMedical informaticsClinical natural language processingNatural language processingSocial media applicationsData miningElectronic health recordsMedical domainData scienceLanguage processingMedia applicationsHealth recordsInformaticsSpecial themeSafety analysisMiningPersonalizationIssuesPatient safety analysesInternational ConferenceResearch articlesProcessingHealthcareRecent advancesDATS, the data tag suite to enable discoverability of datasets
Sansone S, Gonzalez-Beltran A, Rocca-Serra P, Alter G, Grethe J, Xu H, Fore I, Lyle J, Gururaj A, Chen X, Kim H, Zong N, Li Y, Liu R, Ozyurt I, Ohno-Machado L. DATS, the data tag suite to enable discoverability of datasets. Scientific Data 2017, 4: 170059. PMID: 28585923, PMCID: PMC5460592, DOI: 10.1038/sdata.2017.59.Peer-Reviewed Original ResearchFinding useful data across multiple biomedical data repositories using DataMed
Ohno-Machado L, Sansone S, Alter G, Fore I, Grethe J, Xu H, Gonzalez-Beltran A, Rocca-Serra P, Gururaj A, Bell E, Soysal E, Zong N, Kim H. Finding useful data across multiple biomedical data repositories using DataMed. Nature Genetics 2017, 49: 816-819. PMID: 28546571, PMCID: PMC6460922, DOI: 10.1038/ng.3864.Peer-Reviewed Original ResearchConceptsBiomedical data repositoriesHealth big dataData setsKnowledge discoveryBig dataMultiple repositoriesSearch enginesData indexFAIR principlesDataMedData repositoryService providersKnowledge initiativesKnowledge expertsBiomedical research communityResearch communityRepositoryScience landscapeUseful dataInteroperabilityMetadataFindabilitySetEngineData
2015
Classification of Cancer Primary Sites Using Machine Learning and Somatic Mutations
Chen Y, Sun J, Huang L, Xu H, Zhao Z. Classification of Cancer Primary Sites Using Machine Learning and Somatic Mutations. BioMed Research International 2015, 2015: 491502. PMID: 26539502, PMCID: PMC4619847, DOI: 10.1155/2015/491502.Peer-Reviewed Original ResearchConceptsMachine learningF-measureAvailable big dataSupport vector machineBig dataVector machineClassification experimentsAccurate classificationCancer classificationGene function informationMachineSomatic mutation informationClassificationMutation informationFunction informationLearningGene symbolsInformationGene featuresGreat opportunityPerformanceSomatic mutation dataMutation dataAccuracyPredictionEducation, collaboration, and innovation: intelligent biology and medicine in the era of big data
Ruan J, Jin V, Huang Y, Xu H, Edwards J, Chen Y, Zhao Z. Education, collaboration, and innovation: intelligent biology and medicine in the era of big data. BMC Genomics 2015, 16: s1. PMID: 26099197, PMCID: PMC4474420, DOI: 10.1186/1471-2164-16-s7-s1.Peer-Reviewed Original ResearchUsing Ontology Fingerprints to disambiguate gene name entities in the biomedical literature
Chen G, Zhao J, Cohen T, Tao C, Sun J, Xu H, Bernstam E, Lawson A, Zeng J, Johnson A, Holla V, Bailey A, Lara-Guerra H, Litzenburger B, Meric-Bernstam F, Zheng W. Using Ontology Fingerprints to disambiguate gene name entities in the biomedical literature. Database 2015, 2015: bav034. PMID: 25858285, PMCID: PMC4390608, DOI: 10.1093/database/bav034.Peer-Reviewed Original Research