2007
UmuD and RecA Directly Modulate the Mutagenic Potential of the Y Family DNA Polymerase DinB
Godoy V, Jarosz D, Simon S, Abyzov A, Ilyin V, Walker G. UmuD and RecA Directly Modulate the Mutagenic Potential of the Y Family DNA Polymerase DinB. Molecular Cell 2007, 28: 1058-1070. PMID: 18158902, PMCID: PMC2265384, DOI: 10.1016/j.molcel.2007.10.025.Peer-Reviewed Original ResearchMeSH KeywordsAmino Acid SequenceBinding SitesBlotting, Far-WesternDNA Polymerase betaDNA-Directed DNA PolymeraseEscherichia coliEscherichia coli ProteinsModels, MolecularMolecular Sequence DataMutagenesisMutationProtein BindingProtein Structure, TertiaryRec A RecombinasesSequence Homology, Amino AcidConceptsRegulatory protein-protein interactionsDNA damage-inducible proteinProtein-protein interactionsY-family DNA polymerasesFamily DNA polymerasesMutagenic phenotypeOpen active siteDinBRecAMutagenic potentialDNA polymeraseFrameshift mutagenesisProteinStructural modelingActive siteEukaryotesOrthologsArchaeaUmuDMutagenesisPolymerasePhenotypeBacteriaSitesEvolutionA comprehensive analysis of non-sequential alignments between all protein structures
Abyzov A, Ilyin V. A comprehensive analysis of non-sequential alignments between all protein structures. BMC Molecular And Cell Biology 2007, 7: 78. PMID: 18005453, PMCID: PMC2213659, DOI: 10.1186/1472-6807-7-78.Peer-Reviewed Original Research
2004
Structural alignment of proteins by a novel TOPOFIT method, as a superimposition of common volumes at a topomax point
Ilyin V, Abyzov A, Leslin C. Structural alignment of proteins by a novel TOPOFIT method, as a superimposition of common volumes at a topomax point. Protein Science 2004, 13: 1865-1874. PMID: 15215530, PMCID: PMC2279929, DOI: 10.1110/ps.04672604.Peer-Reviewed Original Research