2025
Ordinal Unsupervised Domain Adaptation With Recursively Conditional Gaussian Imposed Variational Disentanglement
Liu X, Li S, Ge Y, Ye P, You J, Lu J. Ordinal Unsupervised Domain Adaptation With Recursively Conditional Gaussian Imposed Variational Disentanglement. IEEE Transactions On Pattern Analysis And Machine Intelligence 2025, 47: 3219-3232. PMID: 35704544, DOI: 10.1109/tpami.2022.3183115.Peer-Reviewed Original ResearchUnsupervised domain adaptationDomain adaptationCross-domain imagesFacial age estimationLatent spaceScalability issuesContent spaceDiscrete labelsLatent vectorsOrdinal classificationContent vectorsSelf-trainingMedical diagnosisConstraint modelPartially ordered setSource/targetJoint distributionVectorLabelingTaskDataAge estimationClassificationSpaceRecursionPrivacy in population protocols with probabilistic scheduling
Amir T, Aspnes J. Privacy in population protocols with probabilistic scheduling. Theoretical Computer Science 2025, 1024: 114926. DOI: 10.1016/j.tcs.2024.114926.Peer-Reviewed Original ResearchPopulation protocol modelProtocol modelProbabilistic schedulingInformation-theoreticInput vectorAnalyze distributed algorithmsDefinition of privacyConcept of anonymityIssues of privacyIoT devicesSensor networksMobile agentsAgents' inputsPopulation protocolsPrivacyAlgorithmIoTSchedulingDeniabilityProtocolInputGuaranteesAnonymityDronesVector
2023
Factor Augmented Inverse Regression and its Application to Microbiome Data Analysis
Pang D, Zhao H, Wang T. Factor Augmented Inverse Regression and its Application to Microbiome Data Analysis. Journal Of The American Statistical Association 2023, 119: 1957-1967. DOI: 10.1080/01621459.2023.2231577.Peer-Reviewed Original ResearchInverse regressionCount vectorsLow-dimensional summariesAsymptotic propertiesVariational expectation-maximization algorithmExpectation-maximization algorithmGroup lassoVariational approximationApproximate inferenceSupplementary materialsCount dataModel selectionInformation criterionAbundance of featuresVectorPrediction of host phenotypeOverdispersionLatent factorsApproximation
2022
Gene therapy applications to transfusion medicine
Tabibi S, Gehrie E, Bruscia E, Krause D. Gene therapy applications to transfusion medicine. 2022, 642-647. DOI: 10.1002/9781119719809.ch56.ChaptersGene therapyVector-based gene therapyViral vector-based gene therapyGene therapy applicationsTranscription activator-like effector nucleasesZinc finger nucleasesGene-editing approachesNonviral vectorsGene-editing techniquesGene integrationTherapy applicationsFinger nucleasesEffector nucleasesViral vectorsReplication-competent virusPossible applicationsGenetic materialApplicationsNucleaseTarget cellsVectorCRISPR
2021
VectorMOD: Method for Bottom-Up Proteomic Characterization of rAAV Capsid Post-Translational Modifications and Vector Impurities
Rumachik NG, Malaker SA, Paulk NK. VectorMOD: Method for Bottom-Up Proteomic Characterization of rAAV Capsid Post-Translational Modifications and Vector Impurities. Frontiers In Immunology 2021, 12: 657795. PMID: 33868302, PMCID: PMC8047074, DOI: 10.3389/fimmu.2021.657795.Peer-Reviewed Original Research
2019
Context-specific interaction networks from vector representation of words
Manica M, Mathis R, Cadow J, Rodríguez Martínez M. Context-specific interaction networks from vector representation of words. Nature Machine Intelligence 2019, 1: 181-190. DOI: 10.1038/s42256-019-0036-1.Peer-Reviewed Original ResearchVector representations of wordsVector representationRepresentations of wordsDomain-specific knowledgeMetric outperformsUnsupervised methodBiomedical articlesSemantic rulesBiomedical publicationsExpert knowledgeScientific domainsRobust to parameter choicesParameter choicesMetricsCorpusBiomedical factsManual curationExtract interactionsInteraction networkCancer typesSTRING databaseWordsVectorNetworkAnnotation
2018
The discrete sign problem: Uniqueness, recovery algorithms and phase retrieval applications
Leshem B, Raz O, Jaffe A, Nadler B. The discrete sign problem: Uniqueness, recovery algorithms and phase retrieval applications. Applied And Computational Harmonic Analysis 2018, 45: 463-485. DOI: 10.1016/j.acha.2016.12.003.Peer-Reviewed Original ResearchRetrieval applicationsRecovery algorithmRetrieval problemPhase retrieval problemDimensional vectorHigh sampling rateAlgorithmDiscrete Fourier transformNoise-free caseMeasurement vectorPhase retrievalSpecific instancesSampling rateMultiple solutionsRetrievalApplicationsObjectsSign patternSpecial caseVectorSolutionInstancesPhase problem
2016
Folic acid-decorated polyamidoamine dendrimer mediates selective uptake and high expression of genes in head and neck cancer cells
Xu L, Kittrell S, Yeudall WA, Yang H. Folic acid-decorated polyamidoamine dendrimer mediates selective uptake and high expression of genes in head and neck cancer cells. Nanomedicine 2016, 11: 2959-2973. PMID: 27781559, PMCID: PMC5144492, DOI: 10.2217/nnm-2016-0244.Peer-Reviewed Original ResearchConceptsNeck cancer cellsCancer cellsFR-dependent mannerEnhanced gene expressionGene expressionSame binding siteCellular uptakeGenesDelivery of genesBinding sitesHigh expressionFree FASuitable vectorPlasmidDNA plasmidsCellsTransfection resultsExpressionTransfection efficiencySelective uptakeUptakeFolate receptorHigh levelsVectorFAGene therapy applications to transfusion medicine
Gehrie E, Bersenev A, Bruscia E, Krause D, Schulz W. Gene therapy applications to transfusion medicine. 2016, 452-455. DOI: 10.1002/9781119013020.ch38.ChaptersGene therapyTherapeutic genetic materialGene therapy applicationsTranscription activator-like effector nucleasesZinc finger nucleasesPackaging cell lineGene-modified cellsGene-editing approachesNonviral techniquesTherapy applicationsFinger nucleasesEffector nucleasesViral vectorsShort palindromic repeatsVector systemReplication-competent virusPalindromic repeatsHemophilia BPossible applicationsGenetic materialNucleaseApplicationsGenetic diseasesFactor IXVector
2014
Role of the Vector in Arbovirus Transmission
Conway MJ, Colpitts TM, Fikrig E. Role of the Vector in Arbovirus Transmission. Annual Review Of Virology 2014, 1: 71-88. PMID: 26958715, PMCID: PMC7809425, DOI: 10.1146/annurev-virology-031413-085513.Peer-Reviewed Original ResearchDisease vectorsDominant lethal geneArbovirus transmissionTransmission of arbovirusesLethal genesMolecular detailsTransgenic mosquitoesHost-seeking behaviorMosquito populationsArboviral diseasesGenomicsProteomicsPrevalence of diseaseNovel strategyGenesArbovirusesMicrobesImmunological controlGrowthVectorDiseaseSignificant diseasePathogensHostRole
2011
Development of optimized AAV3 serotype vectors: mechanism of high-efficiency transduction of human liver cancer cells
Cheng B, Ling C, Dai Y, Lu Y, Glushakova L, Gee S, McGoogan K, Aslanidi G, Park M, Stacpoole P, Siemann D, Liu C, Srivastava A, Ling C. Development of optimized AAV3 serotype vectors: mechanism of high-efficiency transduction of human liver cancer cells. Gene Therapy 2011, 19: 375-384. PMID: 21776025, PMCID: PMC3519243, DOI: 10.1038/gt.2011.105.Peer-Reviewed Original ResearchMeSH KeywordsAnimalsBreast NeoplasmsCarcinoma, HepatocellularCell Line, TumorDependovirusFemaleGenetic VectorsHumansLiver NeoplasmsMiceMutagenesis, Site-DirectedProteasome InhibitorsProtein Structure, TertiaryProto-Oncogene Proteins c-metTransduction, GeneticTransplantation, HeterologousTyrosineVirus IntegrationConceptsHigh-efficiency transductionAAV3 vectorsTransduction efficiencySerotype vectorsSurface-exposed tyrosinePotential gene therapyHuman hepatocyte growth factor receptorHuman liver cancer cellsGene therapyLiver cancer cellsTransgene expressionVector entryAAV3 capsidsDirect intratumoral injectionAAV3Tail vein injectionLiver tumor cellsIntratumoral injectionCancer cellsEfficiencyAdenoVectorIntracellular kinase domainVirus serotypes
2009
Fitting a graph to vector data
Daitch S, Kelner J, Spielman D. Fitting a graph to vector data. 2009, 201-208. DOI: 10.1145/1553374.1553400.Peer-Reviewed Original Research
2007
Identification of a TFIID Binding Sequence That Increases Expression from the Ankyrin-1 Promoter: Application to Globin Gene Therapy
Laflamme K, Elnitski L, Wong C, Mary Y, Gallagher P, Bodine D. Identification of a TFIID Binding Sequence That Increases Expression from the Ankyrin-1 Promoter: Application to Globin Gene Therapy. Blood 2007, 110: 3741. DOI: 10.1182/blood.v110.11.3741.3741.Peer-Reviewed Original ResearchGene therapyEffective gene therapyGlobin gene therapyDifferent tissue-specific promotersTissue-specific promotersVector copiesViral vectorsDouble-copy vectorVirus vectorsHematopoietic stem cellsSpecific promotersPromoter libraryLibrary of promotersRecombinant virusesStem cellsInefficient productionRecent demonstrationReporter geneTG dinucleotideInsertional activationHigh titersΓ-globin expressionTherapeutic levelsVectorLocus control regionTU‐FF‐A3‐04: Empirical Investigation of 3D Intrafraction Motion Management Using a Generalized Methodology for Tracking Translating, Rotating and Deforming Targets
Sawant A, Keall P, Srivastava V, Venkat R, Cattell H, Povzner S, Carlson D. TU‐FF‐A3‐04: Empirical Investigation of 3D Intrafraction Motion Management Using a Generalized Methodology for Tracking Translating, Rotating and Deforming Targets. Medical Physics 2007, 34: 2573-2573. DOI: 10.1118/1.2761446.Peer-Reviewed Original ResearchGeneralized methodologyShape/positionTarget position informationMotion perpendicularMLC leaf positionsElliptical motionMotion parallelDosimetric measurementsMotionTarget motionInstantaneous shapeTracking methodologyLeaf travelControl pointsIon chamber arrayTarget positionPosition monitoring systemTrackingRPM dataDose deliveryLung phantomAccuracyVector
2006
VectorBase: a home for invertebrate vectors of human pathogens
Lawson D, Arensburger P, Atkinson P, Besansky N, Bruggner R, Butler R, Campbell K, Christophides G, Christley S, Dialynas E, Emmert D, Hammond M, Hill C, Kennedy R, Lobo N, MacCallum M, Madey G, Megy K, Redmond S, Russo S, Severson D, Stinson E, Topalis P, Zdobnov E, Birney E, Gelbart W, Kafatos F, Louis C, Collins F. VectorBase: a home for invertebrate vectors of human pathogens. Nucleic Acids Research 2006, 35: d503-d505. PMID: 17145709, PMCID: PMC1751530, DOI: 10.1093/nar/gkl960.Peer-Reviewed Original Research
2005
Short report: Phylogenetic relationships of the anthropophilic Plasmodium falciparum malaria vectors in Africa.
MARSHALL J, POWELL J, Caccone A. Short report: Phylogenetic relationships of the anthropophilic Plasmodium falciparum malaria vectors in Africa. American Journal Of Tropical Medicine And Hygiene 2005, 73: 749-52. PMID: 16222020, DOI: 10.4269/ajtmh.2005.73.749.Peer-Reviewed Original ResearchConceptsNumber of speciesMalaria vectorsAfrican mosquito vectorsMosquito vectorsNuclear genesParaphyletic relationshipSubgenus CelliaPhylogenetic relationshipsPhylogenetic analysisAdditional speciesStatistical supportSpeciesPlasmodium falciparumP. falciparumCausative agentCelliaFalciparumGenesHistorical associationVectorBayesian methods
1999
cis Requirements for the Efficient Production of Recombinant DNA Vectors Based on Autonomous Parvoviruses
Kestler J, Neeb B, Struyf S, Van Damme J, Cotmore S, D'Abramo A, Tattersall P, Rommelaere J, Dinsart C, Cornelis J. cis Requirements for the Efficient Production of Recombinant DNA Vectors Based on Autonomous Parvoviruses. Human Gene Therapy 1999, 10: 1619-1632. PMID: 10428207, DOI: 10.1089/10430349950017626.Peer-Reviewed Original ResearchConceptsViral vectorsViral vector productionRecombinant viral vectorsRecombinant DNA vectorsVector productionRecombinant parvovirusesDNA vectorsRecombinant particlesVirus vectorsOverall sizeRecombinant vectorSmall transgenesEfficient productionHelper plasmidForeign DNAEfficient packagingPlasmid DNAParvovirus MVMpRecombinant clonesAutonomous parvovirusesViral terminiInfectious unitsVP sequencesDNA lengthVector
1998
Consistent, persistent expression from modified retroviral vectors in murine hematopoietic stem cells
Robbins P, Skelton D, Yu X, Halene S, Leonard E, Kohn D. Consistent, persistent expression from modified retroviral vectors in murine hematopoietic stem cells. Proceedings Of The National Academy Of Sciences Of The United States Of America 1998, 95: 10182-10187. PMID: 9707621, PMCID: PMC21482, DOI: 10.1073/pnas.95.17.10182.Peer-Reviewed Original ResearchMeSH KeywordsAnimalsBase SequenceBone Marrow TransplantationColony-Forming Units AssayDNA MethylationDNA PrimersDNA, RecombinantFemaleFounder EffectGene ExpressionGene Transfer TechniquesGenetic VectorsHematopoietic Stem CellsMaleMiceMice, Inbred C57BLMoloney murine leukemia virusRepetitive Sequences, Nucleic AcidRetroviridaeTransduction, GeneticTransplantation, IsogeneicVirus Integration
1991
Fast wavelet transforms and numerical algorithms I
Beylkin G, Coifman R, Rokhlin V. Fast wavelet transforms and numerical algorithms I. Communications On Pure And Applied Mathematics 1991, 44: 141-183. DOI: 10.1002/cpa.3160440202.Peer-Reviewed Original ResearchPseudo-differential operatorsClass of algorithmsLinear operatorsTheory of waveletsN matrixNumerical experimentsArbitrary vectorOrder ONumerical applicationsNarrow classAlgorithm IOperatorsDetailed analytical informationIntractable problemClassAlgorithmMatrixAnalytical informationVectorTheorySchemeO operationsProblemWavelets
1987
Papillomavirus Cloning Vectors
DiMaio D. Papillomavirus Cloning Vectors. The Viruses 1987, 293-319. DOI: 10.1007/978-1-4757-0584-3_11.Peer-Reviewed Original Research
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