2015
Quantifying and Optimizing Single-Molecule Switching Nanoscopy at High Speeds
Lin Y, Long JJ, Huang F, Duim WC, Kirschbaum S, Zhang Y, Schroeder LK, Rebane AA, Velasco MG, Virrueta A, Moonan DW, Jiao J, Hernandez SY, Zhang Y, Bewersdorf J. Quantifying and Optimizing Single-Molecule Switching Nanoscopy at High Speeds. PLOS ONE 2015, 10: e0128135. PMID: 26011109, PMCID: PMC4444241, DOI: 10.1371/journal.pone.0128135.Peer-Reviewed Original ResearchKinetically coupled folding of a single HIV-1 glycoprotein 41 complex in viral membrane fusion and inhibition
Jiao J, Rebane AA, Ma L, Gao Y, Zhang Y. Kinetically coupled folding of a single HIV-1 glycoprotein 41 complex in viral membrane fusion and inhibition. Proceedings Of The National Academy Of Sciences Of The United States Of America 2015, 112: e2855-e2864. PMID: 26038562, PMCID: PMC4460471, DOI: 10.1073/pnas.1424995112.Peer-Reviewed Original Research
2003
Statistical Mechanics of Sequence-Dependent Circular DNA and Its Application For DNA Cyclization
Zhang Y, Crothers DM. Statistical Mechanics of Sequence-Dependent Circular DNA and Its Application For DNA Cyclization. Biophysical Journal 2003, 84: 136-153. PMID: 12524271, PMCID: PMC1302599, DOI: 10.1016/s0006-3495(03)74838-3.Peer-Reviewed Original ResearchConceptsStatistical mechanicsAccurate analytic expressionsInhomogeneous DNAMonte Carlo simulationsAnalytic expressionsPartition functionHarmonic approximationEffect of curvatureCarlo simulationsEquilibrium configurationsLinear formThermal fluctuationsThermodynamic quantitiesSequence-dependent DNA bendingDNA cyclizationMinimum energy configurationIterative searchNew theoryMechanicsJ factorEnergy configurationTheoryCurvatureSimulationsApproximation