2022
N 6-methyladenosine enhances post-transcriptional gene regulation by microRNAs
Kanoria S, Rennie WA, Carmack CS, Lu J, Ding Y. N 6-methyladenosine enhances post-transcriptional gene regulation by microRNAs. Bioinformatics Advances 2022, 2: vbab046. PMID: 35098135, PMCID: PMC8792947, DOI: 10.1093/bioadv/vbab046.Peer-Reviewed Original ResearchPost-transcriptional gene regulationMiRNA-binding sitesGene regulationMiRNA-mediated gene regulationEukaryotic messenger RNAsMiRNA-mediated regulationMiRNA-target bindingRNA-binding proteinMiRNA target sitesPost-transcriptional regulatorsPotential methylation sitesHigh GC contentHigh-throughput dataArgonaute proteinsEvolutionary conservationPrevalent modificationTarget mRNAsGC contentMethylation sitesTarget secondary structureGene expressionRNA structureSecondary structureMessenger RNAFunctional significance
2016
STarMir Tools for Prediction of microRNA Binding Sites
Kanoria S, Rennie W, Liu C, Carmack CS, Lu J, Ding Y. STarMir Tools for Prediction of microRNA Binding Sites. Methods In Molecular Biology 2016, 1490: 73-82. PMID: 27665594, PMCID: PMC5353976, DOI: 10.1007/978-1-4939-6433-8_6.Peer-Reviewed Original ResearchConceptsMessenger RNAEndogenous short noncoding RNAsGene expressionMammalian biological processesHigh-throughput miRNATarget messenger RNAsShort noncoding RNAsMicroRNA Binding SitesCertain human diseasesCross-species validationTranslational repressionMiRNA functionGene regulationSeedless sitesMRNA degradationNoncoding RNAsRegulatory moleculesBiological processesSequence featuresHuman diseasesImmunoprecipitation studiesMiRNAComputational predictionsBinding sitesMiRNAs