2023
Systematic characterization of photoperiodic gene expression patterns reveals diverse seasonal transcriptional systems in Arabidopsis
Leung C, Tarté D, Oliver L, Wang Q, Gendron J. Systematic characterization of photoperiodic gene expression patterns reveals diverse seasonal transcriptional systems in Arabidopsis. PLOS Biology 2023, 21: e3002283. PMID: 37699055, PMCID: PMC10497145, DOI: 10.1371/journal.pbio.3002283.Peer-Reviewed Original ResearchConceptsExpression patternsCis-element analysisPhenylpropanoid biosynthesis pathwaySeasonal expression patternsImportant cellular pathwaysGene expression patternsThousands of genesFunctional enrichment analysisGene expression dataAlign growthArabidopsis plantsPhotoperiodic floweringTranscriptional networksPhotoperiodic genesBiosynthesis pathwayCellular processesPhenylpropanoid pathwayTranscriptomic experimentsTranscriptomic dataTranscriptional systemCellular pathwaysEnrichment analysisGene expressionGene clusteringExpression data
2017
Mapping Protein–Protein Interactions Using Affinity Purification and Mass Spectrometry
Lee CM, Adamchek C, Feke A, Nusinow DA, Gendron JM. Mapping Protein–Protein Interactions Using Affinity Purification and Mass Spectrometry. Methods In Molecular Biology 2017, 1610: 231-249. PMID: 28439867, DOI: 10.1007/978-1-4939-7003-2_15.Peer-Reviewed Original ResearchConceptsAP-MSHigher-order protein complexesAffinity purificationMapping protein-protein interactionsProtein-protein interaction networkProtein-protein interactionsMeaningful complexesProtein interactomeProtein complexesProtein-specific antibodiesMass spectrometry technologyInteraction networksCellular pathwaysTransient interactionsMass spectrometryInteractomeNonspecific interactionsSpectrometry technologyUnbiased methodComplexesPurificationComprehensive knowledgeCrucial stepPlantsProtein