MtING2 encodes an ING domain PHD finger protein which affects Medicago growth, flowering, global patterns of H3K4me3, and gene expression
Jaudal M, Mayo‐Smith M, Poulet A, Whibley A, Peng Y, Zhang L, Thomson G, Trimborn L, Jacob Y, van Wolfswinkel J, Goldstone D, Wen J, Mysore K, Putterill J. MtING2 encodes an ING domain PHD finger protein which affects Medicago growth, flowering, global patterns of H3K4me3, and gene expression. The Plant Journal 2022, 112: 1029-1050. PMID: 36178149, PMCID: PMC9828230, DOI: 10.1111/tpj.15994.Peer-Reviewed Original ResearchConceptsGene-edited mutantsGene expressionWinter-annual ArabidopsisWild-type plantsPlant homeodomain (PHD) fingerStrong mutant phenotypePHD finger proteinChIP-seq analysisRNA sequencing experimentsExpression of activatorsPHD fingerMutant phenotypeFinger proteinMedicago truncatulaImportant physiological roleAbnormal leavesInsertion mutantsMutant studiesEpigenetic mechanismsMost plantsSmall seedsGrowth genesKey regulatorWild typeMutantsNODeJ: an ImageJ plugin for 3D segmentation of nuclear objects
Dubos T, Poulet A, Thomson G, Péry E, Chausse F, Tatout C, Desset S, van Wolfswinkel JC, Jacob Y. NODeJ: an ImageJ plugin for 3D segmentation of nuclear objects. BMC Bioinformatics 2022, 23: 216. PMID: 35668354, PMCID: PMC9169307, DOI: 10.1186/s12859-022-04743-6.Peer-Reviewed Original ResearchConceptsImageJ pluginCommand-line optionsChromatin organizationThree-dimensional imaging technologyArabidopsis thaliana nucleiDNA FISH experimentsNodeJSSource codePublic datasetsProgram segmentsReduced processing timePluginProcessing timeAbiotic stressesHeterochromatin domainsLaplacian convolutionFISH experimentsSubnuclear structuresCellular processesHigh-throughput analysisPlant systemsProcessing methodsDiverse setImaging technologyImages