2022
Whole Genome Analyses Accurately Identify Neisseria spp. and Limit Taxonomic Ambiguity
Khoder M, Osman M, Kassem I, Rafei R, Shahin A, Fournier P, Rolain J, Hamze M. Whole Genome Analyses Accurately Identify Neisseria spp. and Limit Taxonomic Ambiguity. International Journal Of Molecular Sciences 2022, 23: 13456. PMID: 36362240, PMCID: PMC9657967, DOI: 10.3390/ijms232113456.Peer-Reviewed Original ResearchConceptsDraft genomeComplete genome sequenceWhole-genome analysisNCBI GenBank databaseMatrix-assisted laser desorptionGenomic toolsPhylogenetic relationshipsTaxonomic ambiguityBacterial taxonomyGenome sequenceGenome analysisGenomic levelTaxonomic relationshipsTaxonomic toolGenBank databaseGenome sequencingGenomeLaser desorptionSpeciesNeisseria sppWGS analysisSppNeisseriaSequencingStrains
2021
Historical, current, and emerging tools for identification and serotyping of Shigella
Halimeh F, Rafei R, Osman M, Kassem I, Diene S, Dabboussi F, Rolain J, Hamze M. Historical, current, and emerging tools for identification and serotyping of Shigella. Brazilian Journal Of Microbiology 2021, 52: 2043-2055. PMID: 34524650, PMCID: PMC8441030, DOI: 10.1007/s42770-021-00573-5.Peer-Reviewed Original Research
2017
Prevalence, transmission, and host specificity of Cryptosporidium spp. in various animal groups from two French zoos
Osman M, El Safadi D, Benamrouz-Vanneste S, Cian A, Moriniere R, Gantois N, Delgado-Viscogliosi P, Guyot K, Bosc S, Chabé M, Petit T, Viscogliosi E, Certad G. Prevalence, transmission, and host specificity of Cryptosporidium spp. in various animal groups from two French zoos. Parasitology Research 2017, 116: 3419-3422. PMID: 29030716, DOI: 10.1007/s00436-017-5645-1.Peer-Reviewed Original ResearchConceptsCryptosporidium sppCaptivity animalsFrench zoosSpecies of CryptosporidiumPrevalence of CryptosporidiumFecal samplesC. galliC. tyzzeriC. andersoniCryptosporidium speciesFirst molecular studyCryptosporidium DNACryptosporidium infectionHost specificityPotential reservoirsDifferent hostsCryptosporidiumMolecular studiesZoological gardensSpeciesAnimal groupsSppAnimalsParasitesAndersoni
2015
Prevalence and genetic diversity of the intestinal parasites Blastocystis sp. and Cryptosporidium spp. in household dogs in France and evaluation of zoonotic transmission risk
Osman M, Bories J, Safadi D, Poirel M, Gantois N, Benamrouz-Vanneste S, Delhaes L, Hugonnard M, Certad G, Zenner L, Viscogliosi E. Prevalence and genetic diversity of the intestinal parasites Blastocystis sp. and Cryptosporidium spp. in household dogs in France and evaluation of zoonotic transmission risk. Veterinary Parasitology 2015, 214: 167-170. PMID: 26395822, DOI: 10.1016/j.vetpar.2015.09.015.Peer-Reviewed Original ResearchConceptsCryptosporidium sppHousehold dogsBlastocystis spC. canisCanine populationZoonotic transmission riskFecal samplesZoonotic riskGastrointestinal parasitesDomestic dogsZoonotic reservoirsGenetic diversityCystoisospora spGastrointestinal symptomsCommon parasiteLight microscopy examinationNatural hostOverall prevalenceSppLow prevalenceSubtype 2Giardia spIntestinal parasitesIntestinal protozoaMolecular epidemiology