2020
Whole-Genome and RNA Sequencing Reveal Variation and Transcriptomic Coordination in the Developing Human Prefrontal Cortex
Werling DM, Pochareddy S, Choi J, An JY, Sheppard B, Peng M, Li Z, Dastmalchi C, Santpere G, Sousa AMM, Tebbenkamp ATN, Kaur N, Gulden FO, Breen MS, Liang L, Gilson MC, Zhao X, Dong S, Klei L, Cicek AE, Buxbaum JD, Adle-Biassette H, Thomas JL, Aldinger KA, O’Day D, Glass IA, Zaitlen NA, Talkowski ME, Roeder K, State MW, Devlin B, Sanders SJ, Sestan N. Whole-Genome and RNA Sequencing Reveal Variation and Transcriptomic Coordination in the Developing Human Prefrontal Cortex. Cell Reports 2020, 31: 107489. PMID: 32268104, PMCID: PMC7295160, DOI: 10.1016/j.celrep.2020.03.053.Peer-Reviewed Original ResearchMeSH KeywordsBase SequenceBrainComputational BiologyDatabases, GeneticExome SequencingGenetic Predisposition to DiseaseGenetic VariationGenome-Wide Association StudyGenomicsHumansPhenotypePolymorphism, Single NucleotidePrefrontal CortexQuantitative Trait LociSequence Analysis, RNATranscriptomeWhole Genome SequencingConceptsExpression levelsGene expression levelsTranscriptomic coordinationDisorder lociNeuropsychiatric traitsSpecific genesRisk lociGene expressionGenomic variantsDevelopmental stagesCell typesGenesLociTissue RNACommon variantsPostnatal stagesUnique resourceSpecific variantsExpressionEQTLsVariantsGenomeHuman prefrontal cortexRNATraits
2015
Embryonic Stem Cells License a High Level of Dormant Origins to Protect the Genome against Replication Stress
Ge XQ, Han J, Cheng EC, Yamaguchi S, Shima N, Thomas JL, Lin H. Embryonic Stem Cells License a High Level of Dormant Origins to Protect the Genome against Replication Stress. Stem Cell Reports 2015, 5: 185-194. PMID: 26190528, PMCID: PMC4618655, DOI: 10.1016/j.stemcr.2015.06.002.Peer-Reviewed Original ResearchConceptsEmbryonic stem cellsStem/progenitor cellsNeural stem/progenitor cellsStem cellsProgenitor cellsTissue stem/progenitor cellsMCM2-7 complexDNA replication originsTissue-specific stem/progenitor cellsStem cell typesGenome integrityGenomic integrityReplication stressDormant originsReplication forksReplicative stressDNA replicationReplication originsNeural lineagesDNA damageS phaseCell typesAbnormal neurogenesisCellsGenome
2001
Human medulloblastoma cell line DEV is a potent tool to screen for factors influencing differentiation of neural stem cells
Buzanska L, Spassky N, Belin M, Giangrande A, Guillemot F, Klämbt C, Labouesse M, Thomas J, Domanska‐Janik K, Zalc B. Human medulloblastoma cell line DEV is a potent tool to screen for factors influencing differentiation of neural stem cells. Journal Of Neuroscience Research 2001, 65: 17-23. PMID: 11433425, DOI: 10.1002/jnr.1123.Peer-Reviewed Original ResearchMeSH KeywordsAnimalsBasic Helix-Loop-Helix Transcription FactorsCaenorhabditis elegansCaenorhabditis elegans ProteinsCell DifferentiationCerebellar NeoplasmsCulture MediaDNA-Binding ProteinsDrosophilaDrosophila ProteinsGene ExpressionGreen Fluorescent ProteinsHumansIndicators and ReagentsLuminescent ProteinsMedulloblastomaNerve Tissue ProteinsNeurogliaNeuronsNeuropeptidesRepressor ProteinsStem CellsTrans-ActivatorsTranscription FactorsTransfectionTumor Cells, CulturedConceptsTranscription factorsDev cellsGlial specificationDrosophila glial cellsCell linesTranscription factor genesDifferent transcription factorsEmbryonic Drosophila CNSGlial cellsMost glial cellsFly gliaFunctional conservationMurine geneDrosophila CNSGlial fateNeural cell linesFactor genesNeural stem cellsProcess of specificationHuman neural cell linesFunction experimentsNeurogenin 1Neuronal differentiationOligodendroglial cell typesCell types
2000
Spatiotemporal development of oligodendrocytes in the embryonic brain
Thomas J, Spassky N, Villegas E, Olivier C, Cobos I, Goujet‐Zalc C, Martínez S, Zalc B. Spatiotemporal development of oligodendrocytes in the embryonic brain. Journal Of Neuroscience Research 2000, 59: 471-476. PMID: 10679785, DOI: 10.1002/(sici)1097-4547(20000215)59:4<471::aid-jnr1>3.0.co;2-3.Peer-Reviewed Original ResearchConceptsCentral nervous systemOligodendrocyte precursor cellsPrecursor cellsNeural tubeSite of originSubventricular zoneNervous systemVentricular layerOligodendrocyte precursorsFirst neuronsOligodendrocyte progenitorsOligodendrocytesEmbryonic brainRostrocaudal axisLast cell typeQuail-chick chimerasProgenitor cellsRecent dataBrainCell typesMosaic populationProgenitor stageCellsNeurons