2020
864. Whole Genome Sequencing is Unable to Track Candida auris Transmission
Roberts S, Ozer E, Zembower T, Qi C. 864. Whole Genome Sequencing is Unable to Track Candida auris Transmission. Open Forum Infectious Diseases 2020, 7: s470-s471. PMCID: PMC7776755, DOI: 10.1093/ofid/ofaa439.1053.Peer-Reviewed Original ResearchNorthwestern Memorial HospitalWhole-genome sequencingC. aurisSingle nucleotide variantsDifferent body sitesMethods Whole-genome sequencingMemorial HospitalResults TwentyPatient isolatesSame patientTransmission clustersPatientsBody sitesPairwise SNP differencesOutbreak investigationHealthcare settingsCandida aurisHospital systemReference labIdentical isolatesAurisFluconazole sensitivityACLEnvironmental specimensCDC
2017
Minimal genetic change in Vibrio cholerae in Mozambique over time: Multilocus variable number tandem repeat analysis and whole genome sequencing
Garrine M, Mandomando I, Vubil D, Nhampossa T, Acacio S, Li S, Paulson J, Almeida M, Domman D, Thomson N, Alonso P, Stine O. Minimal genetic change in Vibrio cholerae in Mozambique over time: Multilocus variable number tandem repeat analysis and whole genome sequencing. PLOS Neglected Tropical Diseases 2017, 11: e0005671. PMID: 28622368, PMCID: PMC5489214, DOI: 10.1371/journal.pntd.0005671.Peer-Reviewed Original ResearchConceptsMultilocus variable-number tandem-repeat analysisWhole-genome sequencingTandem repeat analysisGenome sequenceMultilocus variable number tandem repeat analysisVariable number tandem repeat analysisVariable-number tandem repeat analysisCholera toxin geneVibrio cholerae isolatesPresence of recombinationMinimal genetic changeMLVA lociCholerae isolatesSeventh pandemicGenetic relatednessClonal complexesToxin genesMolecular clockVibrio choleraeClinical isolatesIdentical isolatesGenetic changesRepeat analysisEnvironmental reservoirsIsolates
2006
Predictors for Haemophilus influenzae Colonization, Antibiotic Resistance and for Sharing an Identical Isolate Among Children Attending 16 Licensed Day-Care Centers in Michigan
Barbosa-Cesnik C, Farjo R, Patel M, Gilsdorf J, McCoy S, Pettigrew M, Marrs C, Foxman B. Predictors for Haemophilus influenzae Colonization, Antibiotic Resistance and for Sharing an Identical Isolate Among Children Attending 16 Licensed Day-Care Centers in Michigan. The Pediatric Infectious Disease Journal 2006, 25: e1-e4. DOI: 10.1097/01.inf.0000209349.30721.3e.Peer-Reviewed Original ResearchPredictors for Haemophilus influenzae Colonization, Antibiotic Resistance and for Sharing an Identical Isolate Among Children Attending 16 Licensed Day-Care Centers in Michigan
Barbosa-Cesnik C, Farjo RS, Patel M, Gilsdorf J, McCoy SI, Pettigrew MM, Marrs C, Foxman B. Predictors for Haemophilus influenzae Colonization, Antibiotic Resistance and for Sharing an Identical Isolate Among Children Attending 16 Licensed Day-Care Centers in Michigan. The Pediatric Infectious Disease Journal 2006, 25: 219-223. PMID: 16511383, DOI: 10.1097/01.inf.0000202130.78540.28.Peer-Reviewed Original ResearchConceptsDay care centersH. influenzae colonizationNontypable H. influenzaeH. influenzaeOtitis mediaColonized childrenAntibiotic resistanceLicensed day care centersSame day care centerHaemophilus influenzae colonizationModifiable risk factorsRisk factor questionnaireH. influenzae isolatesNontypable Haemophilus influenzaeDay care center directorsIdentical isolatesInfluenzae isolatesPacifier useThroat swabsHygiene habitsRisk factorsTobacco smokeImportant causeHaemophilus influenzaeOverall colonization rate
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