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1. Importing an Image into BioImage Suite
2. Understanding your Data
3. Reorientation of Images
4. Brain Extraction/Skull Stripping
a. First Brain Extraction
b. Second Brain Extraction
c. Cropping Image Size
5. Interactive Registration Tools
a. Co-Register 2D Conventional Thick Slice Anatomicals to Individual 3D
b. Co-Register 4D Echoplanar Images to 2D Conventional Thick Slice Anatomicals
c. Co-Register Reference 3D Brain with Individual 3D Brain
d. Loading Registration Files to Check Registrations
e. More Advanced Technique when Registrations are not Accurate
6. Overlay Activation Maps onto Anatomical Maps
a. Overlaying Common Space Tmaps onto Reference Image
b. Overlaying Individual Tmaps onto Individual 2D Anatomical
7. Generating Across Subject Composite Maps
a. Single Group Composites
b. Two Group T-test Comparisons
8. Creating Multi-slices Image Displays
9. Warping Single Subject Data to a Common Reference Space
10. Structural Image Bias Field Correction
11. Generating/Viewing ObjectMaps Using the Surface Editor
a. Creating a New ObjectMap
b. Loading an Already Saved ObjectMap
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6. Overlay Activation Maps onto Anatomical Maps
a. Overlaying Common Space Tmaps onto Reference Image
b. Overlaying Individual Tmaps onto Individual 2D Anatomical
Page Title: 6. Overlay Activation Maps onto Anatomical Maps
6a. Overlaying Common Space Tmaps onto Reference Image
Use brainregister from the main menu to create overlays for common space tmaps.
6b. Overlaying Individual Tmaps onto Individual 2D Anatomical
Use brainregister from the main menu to create overlays for individual tmaps.
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