Abstracts & Publications

We have an active research program and expect the fellow to present at national meetings.

Abstracts

We have an active research program and expect the fellow to present at national meetings.

Convex Probe EBUS for Diagnosing Parenchymal Lung Lesions (Poster Discussion ATS 2010)
Bilateral Simultaneous Thorcenteses are Safe and Provide Rapid Benefit in Patients with Bilateral Pleural Effusions (Poster Presentation ATS 2010)
Life-Altering Distal Stenting for Malignant Airway Obstruction - (Poster Presentation ATS 2010)
Tension Hydrothorax Secondary to Pleuroperitoneal Leak Related to Peritoneal Dialysis - (Poster Presentation ATS 2010)
A Case Report of Acute Pleuropericardial Effusions in a Patient with Ankylosing Spondylitis. (Poster Discussion Session ATS 2010)
An Iatrogenic Diagnosis (Oral Presentation ATS 2010)
Thoracenteses are Safe in Patients with Bleeding Tendencies (Poster Presentation ATS 2011)
The Complementary Role of CD68 Immunostaining in Diagnosing Sarcoidosis by Endobronchial Ultrasound (Oral Presentation ACCP 2011)
Convex Probe Endobronchial Ultrasound for Placement of Intraparenchymal Fiducial Markers to Guide Stereotactic Radiosurgery (Oral Presentation ACCP 2011)
The Safety, Tolerability and Outcomes of Performing EBUS in Obese Patients- (Poster Presentation ATS 2012) Paper in progress.
Expanding the Role for Endobronchial Valves – Bronchocutaneous Fistula (Poster Presentation ATS 2012)
Safety and tolerability of advanced bronchoscopic procedures under moderate conscious sedation (World Bronchology Conference June 2012) Paper submitted.
Impact of thoracentesis on dyspnea and quality of life (Oral Presentation ACCP 2012)
Advanced lung adenocarcinoma masquerading as pulmonary alveolar proteinosis (Oral Presentation ACCP 2012)
Iatrogenic Tracheoesophageal Fistula: A Unique Cause and Treatment. (ATS poster, 2013)
Intrathoracic and circulating fibrocytes are elevated in patients with malignant pleural effusions (ATS presentation, 2013)

Publications

Tracheostomy Is Associated With a Decrease in Delirium and Sedation for Intubated COVID-19 Patients.Morton C, Pisani M, Doyle M, Puchalski J. J Bronchology Interv Pulmonol. 2023 Jan 1; 2023 Jan 1. PMID: 35288526.
Bleeding Risk With Combination Intrapleural Fibrinolytic and Enzyme Therapy in Pleural Infection: An International, Multicenter, Retrospective Cohort Study.Akulian J, Bedawi EO, Abbas H, Argento C, Arnold DT, Balwan A, Batra H, Uribe Becerra JP, Belanger A, Berger K, Burks AC, Chang J, Chrissian AA, DiBardino DM, Fuentes XF, Gesthalter YB, Gilbert CR, Glisinski K, Godfrey M, Gorden JA, Grosu H, Gupta M, Kheir F, Ma KC, Majid A, Maldonado F, Maskell NA, Mehta H, Mercer J, Mullon J, Nelson D, Nguyen E, Pickering EM, Puchalski J, Reddy C, Revelo AE, Roller L, Sachdeva A, Sanchez T, Sathyanarayan P, Semaan R, Senitko M, Shojaee S, Story R, Thiboutot J, Wahidi M, Wilshire CL, Yu D, Zouk A, Rahman NM, Yarmus L. Chest. 2022 Dec; 2022 Jun 16. PMID: 35716828.
Pleural Effusions in the Critically Ill and "At-Bleeding-Risk" Population.Godfrey M, Puchalski J. Clin Chest Med. 2021 Dec. PMID: 34774174.
Improved Diagnostic Yield and Specimen Quality With Endobronchial Ultrasound-Guided Forceps Biopsies: A Retrospective Analysis.Ray AS, Li C, Murphy TE, Cai G, Araujo KLB, Bramley K, DeBiasi EM, Pisani MA, Cortopassi IO, Puchalski JT. Ann Thorac Surg. 2020 Mar; 2019 Oct 5. PMID: 31593653.
Physician Practice Patterns for Performing Thoracentesis in Patients Taking Anticoagulant Medications.DeBiasi EM, Murphy TE, Araujo KLB, Pisani MA, Puchalski JT. J Bronchology Interv Pulmonol. 2020 Jan. PMID: 31436608.
The Effect of a Combined Hydrogen Peroxide-MlrA Treatment on the Phytoplankton Community and Microcystin Concentrations in a Mesocosm Experiment in Lake Ludoš.Dziga D, Tokodi N, Backović DD, Kokociński M, Antosiak A, Puchalski J, Strzałka W, Madej M, Meriluoto J, Svirčev Z. Toxins (Basel). 2019 Dec 11; 2019 Dec 11. PMID: 31835838.
The utility of bronchoscopy in immunocompromised patients: a review.Morton C, Puchalski J. J Thorac Dis. 2019 Dec. PMID: 32030281.
Strengths and Limitations of a Small Randomized Trial Comparing Manual and Vacuum Drainage in Thoracentesis.Senitko M, Murphy TE, Puchalski JT. J Bronchology Interv Pulmonol. 2019 Jul. PMID: 31233478.
Safety and Tolerability of Vacuum Versus Manual Drainage During Thoracentesis: A Randomized Trial.Senitko M, Ray AS, Murphy TE, Araujo KLB, Bramley K, DeBiasi EM, Pisani MA, Cameron K, Puchalski JT. J Bronchology Interv Pulmonol. 2019 Jul. PMID: 30433893.
Advances and Controversies in Thoracentesis and Medical Thoracoscopy.Puchalski J. Semin Respir Crit Care Med. 2019 Jun; 2019 Sep 16. PMID: 31525816.
Pleural Diseases.Puchalski J, Rahman NM. Semin Respir Crit Care Med. 2019 Jun; 2019 Sep 16. PMID: 31525804.
Indwelling Pleural Catheter Placement for Nonmalignant Pleural Effusions.Bramley K, DeBiasi E, Puchalski J. Semin Respir Crit Care Med. 2018 Dec; 2019 Jan 14. PMID: 30641589.
Bronchoscopic lung volume reduction: recent updates.Ramaswamy A, Puchalski J. J Thorac Dis. 2018 Apr. PMID: 29850160.
A novel endobronchial approach to massive hemoptysis complicating silicone Y-stent placement for tracheobronchomalacia: A case report.Ryu C, Boffa D, Bramley K, Pisani M, Puchalski J. Medicine (Baltimore). 2018 Feb. PMID: 29465600.
Extracellular Mitochondrial DNA Is Generated by Fibroblasts and Predicts Death in Idiopathic Pulmonary Fibrosis.Ryu C, Sun H, Gulati M, Herazo-Maya JD, Chen Y, Osafo-Addo A, Brandsdorfer C, Winkler J, Blaul C, Faunce J, Pan H, Woolard T, Tzouvelekis A, Antin-Ozerkis DE, Puchalski JT, Slade M, Gonzalez AL, Bogenhagen DF, Kirillov V, Feghali-Bostwick C, Gibson K, Lindell K, Herzog RI, Dela Cruz CS, Mehal W, Kaminski N, Herzog EL, Trujillo G. Am J Respir Crit Care Med. 2017 Dec 15. PMID: 28783377.
Lung Endothelial MicroRNA-1 Regulates Tumor Growth and Angiogenesis.Korde A, Jin L, Zhang JG, Ramaswamy A, Hu B, Kolahian S, Guardela BJ, Herazo-Maya J, Siegfried JM, Stabile L, Pisani MA, Herbst RS, Kaminski N, Elias JA, Puchalski JT, Takyar SS. Am J Respir Crit Care Med. 2017 Dec 1. PMID: 28853613.
Indications for invasive mediastinal staging in patients with early non-small cell lung cancer staged with PET-CT.Gao SJ, Kim AW, Puchalski JT, Bramley K, Detterbeck FC, Boffa DJ, Decker RH. Lung Cancer. 2017 Jul; 2017 Apr 25. PMID: 28577947.
Pulmonary Manifestations of Solid Non-Pulmonary Malignancies.Puchalski J. Clin Chest Med. 2017 Jun; 2017 Mar 2. PMID: 28477631.
Randomized Trial of Pleural Fluid Drainage Frequency in Patients with Malignant Pleural Effusions. The ASAP Trial.Wahidi MM, Reddy C, Yarmus L, Feller-Kopman D, Musani A, Shepherd RW, Lee H, Bechara R, Lamb C, Shofer S, Mahmood K, Michaud G, Puchalski J, Rafeq S, Cattaneo SM, Mullon J, Leh S, Mayse M, Thomas SM, Peterson B, Light RW. Am J Respir Crit Care Med. 2017 Apr 15. PMID: 27898215.
Recent Advances in Bronchoscopic Treatment of Peripheral Lung Cancers.Harris K, Puchalski J, Sterman D. Chest. 2017 Mar; 2016 Jun 10. PMID: 27292045.
Convex probe EBUS for centrally located parenchymal lesions without a bronchus sign.Argento AC, Puchalski J. Respir Med. 2016 Jul; 2016 Apr 29. PMID: 27296821.
Pleural effusions as markers of mortality and disease severity: a state-of-the-art review.DeBiasi E, Puchalski J. Curr Opin Pulm Med. 2016 Jul. PMID: 27055075.
Endobronchial Ultrasound-Guided Cautery-Assisted Transbronchial Forceps Biopsies: Safety and Sensitivity Relative to Transbronchial Needle Aspiration.Bramley K, Pisani MA, Murphy TE, Araujo KL, Homer RJ, Puchalski JT. Ann Thorac Surg. 2016 May; 2016 Feb 22. PMID: 26912301.
Fiducial Marker Placement Via Convex Probe EBUS.Argento AC, Decker R, Puchalski J. J Bronchology Interv Pulmonol. 2016 Apr. PMID: 27058722.
Management of an elderly patient with respiratory failure due to double aortic arch.Ryu C, Puchalski J, Perkins M, Honiden S. Respir Med Case Rep. 2016; 2015 Dec 17. PMID: 27222782.
Comparison of Transbronchial and Cryobiopsies in Evaluation of Diffuse Parenchymal Lung Disease.Ramaswamy A, Homer R, Killam J, Pisani MA, Murphy TE, Araujo K, Puchalski J. J Bronchology Interv Pulmonol. 2016 Jan. PMID: 26705007.
Diagnostic Yield and Complications of Bronchoscopy for Peripheral Lung Lesions. Results of the AQuIRE Registry.Ost DE, Ernst A, Lei X, Kovitz KL, Benzaquen S, Diaz-Mendoza J, Greenhill S, Toth J, Feller-Kopman D, Puchalski J, Baram D, Karunakara R, Jimenez CA, Filner JJ, Morice RC, Eapen GA, Michaud GC, Estrada-Y-Martin RM, Rafeq S, Grosu HB, Ray C, Gilbert CR, Yarmus LB, Simoff M. Am J Respir Crit Care Med. 2016 Jan 1. PMID: 26367186.
Distal Airway Stenting: How Far Is Too Far?Argento AC, Puchalski JT. J Bronchology Interv Pulmonol. 2015 Oct. PMID: 26492612.
Mortality among patients with pleural effusion undergoing thoracentesis.DeBiasi EM, Pisani MA, Murphy TE, Araujo K, Kookoolis A, Argento AC, Puchalski J. Eur Respir J. 2015 Aug; 2015 Apr 2. PMID: 25837039.
Use of the Blom Tracheotomy Tube with Suction Inner Cannula to Decontaminate Microorganisms from the Subglottic Space. A Proof of Concept.Rabach L, Siegel MD, Puchalski JT, Towle D, Follert M, Johnson KM, Rademaker AW, Leder SB. Ann Am Thorac Soc. 2015 Jun. PMID: 25849332.
Patient-Centered Outcomes Following Thoracentesis.Argento AC, Murphy TE, Pisani MA, Araujo KL, Puchalski J. Pleura (Thousand Oaks). 2015 Jan-Dec; 2015 Sep 1. PMID: 26767192.
Advanced diagnostic bronchoscopy using conscious sedation and the laryngeal nerve block: tolerability, thoroughness, and diagnostic yield.Goyal G, Pisani MA, Murphy TE, Araujo KL, Puchalski JT. Lung. 2014 Dec; 2014 Jun 28. PMID: 24972639.
Thoracentesis and the risks for bleeding: a new era.Puchalski J. Curr Opin Pulm Med. 2014 Jul. PMID: 24852328.
Mortality of Hospitalized Patients with Pleural Effusions.Kookoolis AS, Puchalski JT, Murphy TE, Araujo KL, Pisani MA. J Pulm Respir Med. 2014 Jun. PMID: 25977841.
Recurrent hydrothorax and surgical diaphragmatic repair: report of 2 cases and review of the literature.Christine Argento A, Kim A, Knauert-Brown M, Boffa D, Siegel MD, Jafari B, Puchalski JT. J Bronchology Interv Pulmonol. 2014 Apr. PMID: 24739690.
Tracheobronchial stenosis: causes and advances in management.Puchalski J, Musani AI. Clin Chest Med. 2013 Sep; 2013 Jul 3. PMID: 23993823.
Identification of EGFR mutation, KRAS mutation, and ALK gene rearrangement in cytological specimens of primary and metastatic lung adenocarcinoma.Cai G, Wong R, Chhieng D, Levy GH, Gettinger SN, Herbst RS, Puchalski JT, Homer RJ, Hui P. Cancer Cytopathol. 2013 Sep; 2013 Mar 12. PMID: 23495083.
The safety of thoracentesis in patients with uncorrected bleeding risk.Puchalski JT, Argento AC, Murphy TE, Araujo KL, Pisani MA. Ann Am Thorac Soc. 2013 Aug. PMID: 23952852.
Validation of an interventional pulmonary examination.Lee HJ, Feller-Kopman D, Shepherd RW, Almeida FA, Bechara R, Berkowitz D, Chawla M, Folch E, Haas A, Gillespie C, Lee R, Majid A, Malhotra R, Musani A, Puchalski J, Sterman D, Yarmus L. Chest. 2013 Jun. PMID: 23348963.
Pleural diseases. Preface.Puchalski J. Clin Chest Med. 2013 Mar. PMID: 23411063.
Defying gravity: subdiaphragmatic causes of pleural effusions.Bramley K, Puchalski JT. Clin Chest Med. 2013 Mar. PMID: 23411055.
Etiologies of bilateral pleural effusions.Puchalski JT, Argento AC, Murphy TE, Araujo KL, Oliva IB, Rubinowitz AN, Pisani MA. Respir Med. 2013 Feb; 2012 Dec 7. PMID: 23219348.
Secondary carina Y-stent placement for post-lung-transplant bronchial stenosis.Lee HJ, Puchalski J, Sterman DH, Bhadra K, Kumar R, Gillespie CT, Haas AR. J Bronchology Interv Pulmonol. 2012 Apr. PMID: 23207352.
The pulmonologist's diagnostic and therapeutic interventions in lung cancer.Puchalski J, Feller-Kopman D. Clin Chest Med. 2011 Dec; 2011 Oct 7. PMID: 22054884.
Airway complications following lung transplantation.Puchalski J, Lee HJ, Sterman DH. Clin Chest Med. 2011 Jun. PMID: 21511095.
Critical care education during internal medicine residency: a national survey.Almoosa KF, Goldenhar LM, Puchalski J, Ying J, Panos RJ. J Grad Med Educ. 2010 Dec. PMID: 22132277.
Classification of the thoroughness of mediastinal staging of lung cancer.Detterbeck F, Puchalski J, Rubinowitz A, Cheng D. Chest. 2010 Feb. PMID: 20133290.
Separating stem cells by flow cytometry: reducing variability for solid tissues.Alexander CM, Puchalski J, Klos KS, Badders N, Ailles L, Kim CF, Dirks P, Smalley MJ. Cell Stem Cell. 2009 Dec 4. PMID: 19951686.
Endotracheal spindle cell lipoma presenting as a chronic cough.Sakr L, Puchalski J, Gable C, Sterman DH, Shah S, Haas AR. J Bronchology Interv Pulmonol. 2009 Apr. PMID: 23168509.
GM-CSF autoantibodies and neutrophil dysfunction in pulmonary alveolar proteinosis.Uchida K, Beck DC, Yamamoto T, Berclaz PY, Abe S, Staudt MK, Carey BC, Filippi MD, Wert SE, Denson LA, Puchalski JT, Hauck DM, Trapnell BC. N Engl J Med. 2007 Feb 8. PMID: 17287477.
Studies on genetic changes in rye samples (Secale cereale L.) maintained in a seed bank.Chwedorzewska KJ, Bednarek PT, Lewandowska R, Krajewski P, Puchalski J. Cell Mol Biol Lett. 2006. PMID: 16847558.
Studies on changes in specific rye genome regions due to seed aging and regeneration.Chwedorzewska KJ, Bednarek PT, Puchalski J. Cell Mol Biol Lett. 2002. PMID: 12378262.
AFLP-profiling of long-term stored and regenerated rye Genebank samples.Chwedorzewska KJ, Bednarek PT, Puchalski J, Krajewski P. Cell Mol Biol Lett. 2002. PMID: 12378250.
Effect of insulin and heparin on glucose-induced vascular damage in cell culture.Mandal AK, Puchalski JT, Lemley-Gillespie S, Taylor CA, Kohno M. Kidney Int. 2000 Jun. PMID: 10844618.
Biotransformation of 3-(phenylamino)-1,2-propanediol to 3-(phenylamino)alanine: a chemical link between toxic oil syndrome and eosinophilia-myalgia syndrome.Mayeno AN, Benson LM, Naylor S, Colberg-Beers M, Puchalski JT, Gleich GJ. Chem Res Toxicol. 1995 Oct-Nov. PMID: 8555405.
Numerical determination of continuous ray tracing: the four-component method.Puchalski J. Appl Opt. 1994 Apr 1. PMID: 20885524.
Numerical determination of ray tracing: a new method.Puchalski J. Appl Opt. 1992 Nov 1. PMID: 20733913.
Isoperoxidase spectra of single tulip cultivars and their parrot mutants.Saniewski M, Puchalski J. Experientia. 1977 Jul 15. PMID: 891757.