2018
Uncovering Genomic Regions Associated with Trypanosoma Infections in Wild Populations of the Tsetse Fly Glossina fuscipes
Gloria-Soria A, Dunn WA, Yu X, Vigneron A, Lee KY, Li M, Weiss BL, Zhao H, Aksoy S, Caccone A. Uncovering Genomic Regions Associated with Trypanosoma Infections in Wild Populations of the Tsetse Fly Glossina fuscipes. G3: Genes, Genomes, Genetics 2018, 8: 887-897. PMID: 29343494, PMCID: PMC5844309, DOI: 10.1534/g3.117.300493.Peer-Reviewed Original ResearchConceptsGenomic resourcesRelated speciesCandidate genesNonmodel organismsTranscript librariesFunctional genomicsTranscriptome assemblyFunctional annotationWild populationsPhysiological traitsGenomic regionsDNA regulationMost speciesRNAseq experimentsGenetic basisLaboratory coloniesGenesFunctional studiesPolymorphic sitesSpeciesTrypanosome infection statusGenomeNew assemblyTrypanosoma infectionFlies
2012
Transcriptomic analysis of the oleaginous microalga Neochloris oleoabundans reveals metabolic insights into triacylglyceride accumulation
Rismani-Yazdi H, Haznedaroglu BZ, Hsin C, Peccia J. Transcriptomic analysis of the oleaginous microalga Neochloris oleoabundans reveals metabolic insights into triacylglyceride accumulation. Biotechnology For Biofuels And Bioproducts 2012, 5: 74. PMID: 23006831, PMCID: PMC3549901, DOI: 10.1186/1754-6834-5-74.Peer-Reviewed Original ResearchOleaginous microalga Neochloris oleoabundansTAG productionDe novo transcriptome assemblyMicroalga Neochloris oleoabundansBiofuel precursorsOleaginous microalgaeNovo transcriptome assemblyFatty acid synthesis pathwayMajor functional categoriesInorganic nitrogen assimilationGenetic engineering targetsHigh-quality readsRegulation of genesFatty acid biosynthesisCellular contentQuantitative gene expression analysisNitrogen-limiting conditionsΒ-oxidation pathwayGene expression analysisPyruvate dehydrogenase complexMapping of readsTAG biosynthesisNeochloris oleoabundansTranscriptome assemblyNitrogen assimilation
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