Professor of Radiology and Biomedical Imaging and of Biomedical Engineering; Co-Director MRI Research Center, Magnetic Resonance Imaging
Magnetic Resonance Spectroscopy
Ever since the discovery of Magnetic Resonance Imaging (MRI), the field of MR has diverged into MRI and Magnetic Resonance Spectroscopy (MRS). Whereas MRI typically observes a water signal, MRS detects all chemicals above a minimum concentration threshold. The members of the Yale MRS group have been pioneers in many of the applications of MRS to the study of metabolism in vivo. The detection of glycogen has been a breakthrough in the non-invasive study of liver and muscle function. The development of 13C MRS methods to study dynamic metabolic fluxes provides unique insights into metabolism that can not be obtained by any other technique. Combining MRS methods with other modalities, like electrophysiology, enhances the understanding of the relation between metabolism and function. And while the current applications of MRS are already many and diverse, the future holds even more promise with the exploration of other nuclei and improved hardware.
About Us
The Yale Magnetic Resonance Spectroscopy (MRS) group was founded in 1986 under the leadership of Robert Shulman. Recognizing the potential of MRS to study metabolism and function non-invasively in vivo, the group quickly evolved the MRS studies from cells to animals and ultimately to humans. Among the numerous contributions of the Yale group to the field of in vivo MRS are the development of 13C MR methods to study metabolic fluxes in vivo, the use of multi-modal MR methods to study brain function, and the implementation of sophisticated hardware to address specific MRS problems. Under the leadership of Douglas Rothman, the MRS group has expanded to a large roster of several faculty, staff and postdoctoral associates and students, using three animal (4, 9.4 and 11.7 T) and two human (4 and 7 T) MR systems.
Research
The research performed in the Yale MRS group is as diverse as its faculty. The long and rich history of the Yale MRS group with the study of metabolism using heteronuclear (13C, 15N, 31P) MRS techniques still remains a prime focus point today. Among the many collaborations, 13C MRS is applied to study metabolism in diabetes (Douglas Rothman) and psychiatric disorders (Graeme Mason). Fahmeed Hyder is studying cerebral metabolism in relation to neuronal activity and function with a wide range of techniques, whereas Kevin Behar is studying cerebral metabolism under a variety of conditions, like hypoxia. The research of Robin de Graaf focuses on the further development of MR methods and hardware to enhance the MRS information content and reliability.
Current Projects
Dr. Robin deGraaf’s current research encompasses three primary areas. Central to the technological innovation of this research is the development of methods to achieve magnetic field uniformity throughout the human and animal brain. The problem of magnetic field inhomogeneity is tackled through dynamic shimming and the use of electrical coil and passive shim element arrays. Methods for 13C NMR have been pioneered at YSM, and part of the research involves extending these methods to achieve 3D coverage, higher sensitivity (through 1H detection), and higher specificity (e.g., GABA turnover detection). Additionally, the field of 17O NMR appears promising for fast and sensitive mapping of various metabolic fluxes. This research includes the synthesis of 17O-labeled compounds, the development of novel 17O MR methods, and the in vivo detection of 17O label turnover.
Dr. Fahmeed Hyder's laboratory focuses on several specific ongoing research topics. These include high spatiotemporal resolution fMRI at ultra-high fields to study sensory columns at extremely high resolution, and investigating the electrophysiological basis of the BOLD signal by examining excitatory and inhibitory neural events underlying the response. Additionally, the lab explores the rheological basis of the BOLD signal, considering the contributions of blood plasma and erythrocytes on the BOLD response. The energetics of neuronal populations are studied through fMRI to understand subcortical mechanisms underlying cortical activations for unisensory and multisensory stimuli. Furthermore, the lab is involved in translating smart contrast agents for tumor characterization by MR, aiming to synthesize and translate agents for improved biosensing of pH and temperature.
Dr. Graeme Mason's research integrates quantitative approaches to measure functional brain chemistry and the study of neuropsychiatric disorders. The primary methods employed are 1H and 13C magnetic resonance spectroscopy and mathematical assessment of metabolism. Current research areas include depression, manic-depressive disorder, alcoholism, panic disorder, premenstrual syndrome, and post-partum depression. His primary interests lie in the effects of alcohol and nicotine dependence on the brain. Dr. Mason's research program evaluates both the acute and chronic effects of alcohol and nicotine on the brain, from perspectives of neurotransmission, metabolism, adaptation, and vulnerability to dependence.
Faculty & Researchers
Associate Professor of Radiology and Biomedical Imaging and of Biomedical Engineering
Research Interests- Brain Neoplasms
- Liver Neoplasms
- Molecular Imaging
Associate Professor of Radiology and Biomedical Imaging
Research Interests- Magnetic Resonance Spectroscopy
- Biomarkers, Tumor
- Metabolic Networks and Pathways
Professor of Radiology and Biomedical Imaging
Research Interests- Biomedical Engineering
- Energy Metabolism
- Magnetic Resonance Spectroscopy
- Radiology
Research Scientist in Radiology and Biomedical Imaging
Research Interests- Cerebrovascular Circulation
- Hematocrit
- Membrane Potentials
- Oxygen Consumption
- Fractals
Professor of Radiology and Biomedical Imaging and of Biomedical Engineering; Technical Director, Magnetic Resonance Research Center (mrrc.yale.edu); Program Director, Core Center for Quantitative Neuroscience with Magnetic Resonance (qnmr.yale.edu)
Research Interests- Biomedical Engineering
- Magnetic Resonance Imaging
- Neoplasms by Histologic Type
- Neurosciences
- Radiology
- Molecular Probes
Professor of Radiology and Biomedical Imaging and of Psychiatry; Director Metabolic Modeling and Director Psychiatric MRS, Magnetic Resonance Research Center; Director, Neuroimaging Sciences Training Program, Radiology & Biomedical Imaging and Psychiatry; Chair, Magnetic Resonance Research Center Protocol Review Committee, Radiology & Biomedical Imaging
Research Interests- Alcoholic Intoxication
- Alcoholism
- Amino Acids
- Carbohydrates
- Central Nervous System Diseases
- Fatty Acids
- Mathematical Computing
- Substance Withdrawal Syndrome
- Mood Disorders
- Alcohol-Induced Disorders, Nervous System
- Molecular Mechanisms of Pharmacological Action
- Physiological Effects of Drugs
- Neuroimaging
Associate Research Scientist
Research Interests- Contrast Media
- Glioblastoma
- Carcinoma, Hepatocellular
- Magnetic Resonance Imaging
- Magnetic Resonance Spectroscopy
- Stroke
- Macrocyclic Compounds
Assistant Professor of Radiology and Biomedical Imaging; Director, Small Animal MRI Core, Magnetic Resonance Research Center
Selected Publications
2026
Altering MRI rotating frame relaxations by changing the truncation level of Hyperbolic Secant pulse
Ponticorvo S, Wu L, Lasica A, Laakso H, Sorce D, Rothman D, Mangia S, Michaeli S. Altering MRI rotating frame relaxations by changing the truncation level of Hyperbolic Secant pulse. Journal Of Magnetic Resonance 2026, 390: 108115. PMID: 42335480, DOI: 10.1016/j.jmr.2026.108115.Peer-Reviewed Original ResearchReversible alterations of brain acetate metabolism associated with alcohol consumption
Kumaragamage C, Jiang L, Angarita G, de Graaf R, Guidone E, Coppoli A, Behar K, Gulanski B, Pittman B, Weinzimer S, Rothman D, Krystal J, Mason G. Reversible alterations of brain acetate metabolism associated with alcohol consumption. Neuropsychopharmacology 2026, 1-9. PMID: 42218273, DOI: 10.1038/s41386-026-02455-6.Peer-Reviewed Original ResearchQ‐MRS: Quantitative Magnetic Resonance Spectral Analysis Using Deep Learning
Wu C, Kegeles L, Rothman D, Guo J. Q‐MRS: Quantitative Magnetic Resonance Spectral Analysis Using Deep Learning. NMR In Biomedicine 2026, 39: e70279. PMID: 41948854, DOI: 10.1002/nbm.70279.Peer-Reviewed Original ResearchGlobal scale-free brain activity as a potential neural signature of visual information processing in aging
Racz F, Kaposzta Z, Czoch A, Chang J, Stylianou O, Mukli P, Benge J, Eke A. Global scale-free brain activity as a potential neural signature of visual information processing in aging. Frontiers In Aging Neuroscience 2026, 18: 1770204. PMID: 41994192, PMCID: PMC13080313, DOI: 10.3389/fnagi.2026.1770204.Peer-Reviewed Original ResearchThe microglial TREM2 receptor programs hippocampal development in a mouse model of childhood deprivation
Ahmed S, Bowers C, Munoz-Martin J, Jamwal S, Sanganahalli B, Chen K, Giuliano L, Kaswan Z, Hyder F, Yang X, Kaffman A. The microglial TREM2 receptor programs hippocampal development in a mouse model of childhood deprivation. Brain Behavior And Immunity 2026, 136: 106555. PMID: 41887542, PMCID: PMC13049556, DOI: 10.1016/j.bbi.2026.106555.Peer-Reviewed Original ResearchThis study investigates how early-life deprivation disrupts brain development by impairing microglial synaptic pruning via reduced TREM2, and shows that TREM2 restoration or enrichment rescues cognitive and connectivity deficits.Behavioral deficits and exacerbated neural and hemodynamic odor responses during lifespan of a mouse model of late onset Alzheimer’s disease expressing humanized APOEε4 and Trem2*R47H
Izydorczak M, Oumov M, Udhwani M, Fostok F, Coronas-Samano G, Sanganahalli B, Herman P, Hyder F, Verhagen J. Behavioral deficits and exacerbated neural and hemodynamic odor responses during lifespan of a mouse model of late onset Alzheimer’s disease expressing humanized APOEε4 and Trem2*R47H. Frontiers In Aging Neuroscience 2026, 18: 1622135. PMID: 41777674, PMCID: PMC12950773, DOI: 10.3389/fnagi.2026.1622135.Peer-Reviewed Original ResearchThis study investigates age-related behavioral and brain activity changes in a mouse model of late-onset Alzheimer's disease, showing anxiety, memory deficits, and vascular hyperresponsiveness linked to genetic risk factors APOEε4 and Trem2*R47H.Impact of obesity on aromatic amino acids and brain glucose during acute hyperglycemia
Matson B, Gunawan F, Rothman D, Mason G, Ilkayeva O, Newgard C, Hwang J. Impact of obesity on aromatic amino acids and brain glucose during acute hyperglycemia. AJP Endocrinology And Metabolism 2026, 330: e346-e355. PMID: 41638639, PMCID: PMC13036701, DOI: 10.1152/ajpendo.00463.2025.Peer-Reviewed Original ResearchRobust determination of deuterium abundance in water
de Graaf R, Thomas M, Mason G, Herzog R, De Feyter H. Robust determination of deuterium abundance in water. Magnetic Resonance Materials In Physics, Biology And Medicine 2026, 1-10. PMID: 41553451, PMCID: PMC12884391, DOI: 10.1007/s10334-025-01312-9.Peer-Reviewed Original ResearchHigh-resolution thermal imaging to delineate effects of cancer-induced aerobic glycolysis and endothelial dysfunction
Coman D, Herman P, Rao J, Mihailovic J, Huang Y, Kaneko G, Hyder F. High-resolution thermal imaging to delineate effects of cancer-induced aerobic glycolysis and endothelial dysfunction. Neuro-Oncology Advances 2026, 8: vdag007. PMID: 42137822, PMCID: PMC13168813, DOI: 10.1093/noajnl/vdag007.Peer-Reviewed Original ResearchThis study reveals brain tumors are cooler than normal tissue because they are more glycolytic, acidic, and hypoperfused, highlighting that thermal mapping represents combined effects of aerobic glycolysis and endothelial dysfunction which are cancer hallmarks.Editorial: Deep learning for medical imaging applications
Bonechi S, Bianchini M, Andreini P, Mishra S. Editorial: Deep learning for medical imaging applications. Frontiers In Imaging 2026, 4: 1761718. DOI: 10.3389/fimag.2025.1761718.Commentaries, Editorials and Letters
2025
Validation of Dynamic Deuterium Metabolic Imaging (DMI) for the Measurement of Cerebral Metabolic Rates of Glucose in Rat
Mathy C, Thomas M, Mason G, de Graaf R, De Feyter H. Validation of Dynamic Deuterium Metabolic Imaging (DMI) for the Measurement of Cerebral Metabolic Rates of Glucose in Rat. NMR In Biomedicine 2025, 39: e70194. PMID: 41371621, PMCID: PMC12695439, DOI: 10.1002/nbm.70194.Peer-Reviewed Original ResearchLactate oxidation for brain energy metabolism: To exercise or not, that is the question
Hyder F. Lactate oxidation for brain energy metabolism: To exercise or not, that is the question. The Journal Of Physiology 2025, 603: 6671-6672. PMID: 41145983, DOI: 10.1113/jp290102.Peer-Reviewed Original ResearchThis study investigates how lactate, a glucose-sparing molecule produced during exercise or infusion, fuels brain energy metabolism.Oral intake of deuterated choline at clinical dose for metabolic imaging of brain tumors
Osoliniec V, Thomas M, de Graaf R, De Feyter H. Oral intake of deuterated choline at clinical dose for metabolic imaging of brain tumors. Npj Imaging 2025, 3: 54. PMID: 41136682, PMCID: PMC12552732, DOI: 10.1038/s44303-025-00113-y.Peer-Reviewed Original ResearchFundamentals of Gas‐Free Calibrated fMRI for Oxidative Metabolic Neuroimaging
Hyder F, Herman P. Fundamentals of Gas‐Free Calibrated fMRI for Oxidative Metabolic Neuroimaging. Journal Of Neurochemistry 2025, 169: e70217. PMID: 41044817, DOI: 10.1111/jnc.70217.Peer-Reviewed Reviews, Practice Guidelines, Standards, and Consensus StatementsThis study investigates approaches to calibrate fMRI for clinical applications because of its potential to track neuronal activity with brain metabolism, where to standardize the fMRI signal gas-based methods use inhaled gases (CO2 and/or O2) vs. gas-free techniques rely on pulse sequences.Multicenter Stroke Preclinical Assessment Network Analysis of Cardiovascular Risk Factor Subgroups Treated With the Poly(ADP‐Ribose) Polymerase Inhibitor Veliparib
Koehler R, Bedirian K, Chen M, Shi Y, Cao S, Avery B, Karuppagounder S, Akhter K, Bibic A, Dawson V, Dawson T, Diniz M, Lamb J, Nagarkatti K, Chauhan A, Aronowski J, McCullough L, de Morais A, Jin X, Ayata C, Kumskova M, Patel R, Chauhan A, Leira E, Kamat P, Khan M, Dhandapani K, Hess D, Boisserand L, Sanganahalli B, Sansing L, Lyden P, Lyden P, Lamb J, Nagarkatti K, Bedirian K, Chen M, Diniz M, Hess D, Kamat P, Khan M, Dhandapani K, Arbab A, Siddiqui S, Smith C, Nisar M, Leira E, Chauhan A, Dhanesha N, Patel R, Kumskova M, Thedens D, Wang K, Ayata C, de Morais A, Imai T, Qin T, Jin X, Erdogan T, Yu L, Mandeville J, Kimberly W, Whittier J, Lo E, Arai K, Van Leyen K, Sansing L, Hyder F, Mihailovic J, Sanganahalli B, Diaz‐Perez S, Velazquez S, Beatty H, Johnson C, Herman A, Immakavar E, Koehler R, Dawson T, Dawson V, Shi Y, Cao S, Avery B, Lannon S, Bibic A, Akhter K, Karuppagounder S, Aronowski J, McCullough L, Obertas L, Goh A, Huang S. Multicenter Stroke Preclinical Assessment Network Analysis of Cardiovascular Risk Factor Subgroups Treated With the Poly(ADP‐Ribose) Polymerase Inhibitor Veliparib. Journal Of The American Heart Association 2025, 14: e040914. PMID: 40996065, PMCID: PMC12684482, DOI: 10.1161/jaha.124.040914.Peer-Reviewed Original ResearchEmbracing Scientific Debate in Brain Metabolism
Andersen J, Aldana B, Bak L, Behar K, Borges K, Carruthers A, Cumming P, Derouiche A, Díaz‐García C, Drew K, Duarte J, Ferreira G, Giove F, Gjedde A, Hyder F, Ioannou M, Kann O, Kristian T, Lai J, Mason G, McNay E, Nedergaard M, Nowak T, Patel A, Rae C, Ryan T, Schuck P, Simpson I, Vannucci S, Waagepetersen H, Yellen G, McKenna M. Embracing Scientific Debate in Brain Metabolism. Journal Of Neurochemistry 2025, 169: e70230. PMID: 40966093, DOI: 10.1111/jnc.70230.Commentaries, Editorials and LettersMultivariate Pattern Analysis of Perfusion and Oxygenation Impairment in Asymptomatic Carotid Artery Stenosis
Kufer J, Preibisch C, Göttler J, Schmitzer L, Hoffmann G, Kallmayer M, Zimmer C, Hyder F, Kaczmarz S. Multivariate Pattern Analysis of Perfusion and Oxygenation Impairment in Asymptomatic Carotid Artery Stenosis. Journal Of Neuroimaging 2025, 35: e70084. PMID: 40947496, PMCID: PMC12434150, DOI: 10.1111/jon.70084.Peer-Reviewed Original ResearchPreclinical Ischemic Stroke Multicenter Trials (PRISM) Collective Statement: Opportunities, Challenges, and Recommendations for a New Era
Ayata C, Bath P, Planas A, Allan S, Boltze J, Cabeen R, Gibson C, Cipolla M, Diniz M, Fumagalli S, Hyder F, Koehler R, Liesz A, McCann S, Magnus T, McCullough L, Sena E, Beretta S, Aronowski J, Bosetti F, Wright C, Lyden P, Sansing L. Preclinical Ischemic Stroke Multicenter Trials (PRISM) Collective Statement: Opportunities, Challenges, and Recommendations for a New Era. Stroke 2025, 57: e12-e40. PMID: 40931817, PMCID: PMC12455296, DOI: 10.1161/strokeaha.125.052056.Peer-Reviewed Reviews, Practice Guidelines, Standards, and Consensus StatementsFingolimod as a Potential Cerebroprotectant Results From the Stroke Preclinical Assessment Network
Boisserand L, Herman A, Sanganahalli B, Mihailovic J, Beatty H, Johnson C, Diaz S, DeLong J, Velazquez S, Grutzendler J, Dela Cruz C, Zhou J, Sheth K, Matouk C, Zhan S, Morais A, Imai T, Chauhan A, Patel R, Kumskova M, Shi Y, Avery B, Lamb J, Nagarkatti K, Khan M, Kamat P, Dhandapani K, McCullough L, Aronowski J, Hess D, Koehler R, Lyden P, Leira E, Chauhan A, Ayata C, Chen M, Diniz M, Hyder F, Sansing L, Investigators O. Fingolimod as a Potential Cerebroprotectant Results From the Stroke Preclinical Assessment Network. Stroke 2025, 56: 3280-3293. PMID: 40899256, DOI: 10.1161/strokeaha.125.050903.Peer-Reviewed Original ResearchComment on the Editorial “Embracing the Modern Biochemistry of Brain Metabolism”
Dienel G, Rothman D, Mangia S. Comment on the Editorial “Embracing the Modern Biochemistry of Brain Metabolism”. Journal Of Neurochemistry 2025, 169: e70197. PMID: 40810250, PMCID: PMC12351431, DOI: 10.1111/jnc.70197.Commentaries, Editorials and Letters[18F]SynVesT-1 PET Detects SV2A Changes in the Spinal Cord and Brain of Rats with Spinal Cord Injury
Chen B, Zheng C, Balayeva T, Toyonaga T, Wang X, Tong J, Mennie W, Mihailovic J, Coman D, Hyder F, Strittmatter S, Carson R, Huang Y, Cai Z. [18F]SynVesT-1 PET Detects SV2A Changes in the Spinal Cord and Brain of Rats with Spinal Cord Injury. Journal Of Nuclear Medicine 2025, 66: 1440-1448. PMID: 40675757, PMCID: PMC12410297, DOI: 10.2967/jnumed.124.269291.Peer-Reviewed Original ResearchKetosis Elevates Antioxidants and Markers of Energy Metabolism: A Proton Magnetic Resonance Spectroscopy Study
van Nieuwenhuizen H, Antal B, Hone-Blanchet A, Lithen A, McMahon L, Nikolaidou S, Kuang Z, Clarke K, Jenkins B, Rothman D, Mujica-Parodi L, Ratai E. Ketosis Elevates Antioxidants and Markers of Energy Metabolism: A Proton Magnetic Resonance Spectroscopy Study. Biological Psychiatry Cognitive Neuroscience And Neuroimaging 2025, 10: 1186-1196. PMID: 40633732, DOI: 10.1016/j.bpsc.2025.06.009.Peer-Reviewed Original ResearchMapping of neurovascular and neurometabolic couplings by multimodal optical imaging
Herman P, Sanggaard S, James S, Akif A, Mishra S, Sanganahalli B, Verhagen J, Blumenfeld H, Hyder F. Mapping of neurovascular and neurometabolic couplings by multimodal optical imaging. Cerebral Cortex 2025, 35: bhaf165. PMID: 40624899, PMCID: PMC13070531, DOI: 10.1093/cercor/bhaf165.Peer-Reviewed Original ResearchA Bird's‐Eye View of Glycolytic Upregulation in Activated Brain: The Major Fate of Lactate Is Release From Activated Tissue, Not Shuttling to Nearby Neurons
Dienel G, Rothman D, Mangia S. A Bird's‐Eye View of Glycolytic Upregulation in Activated Brain: The Major Fate of Lactate Is Release From Activated Tissue, Not Shuttling to Nearby Neurons. Journal Of Neurochemistry 2025, 169: e70111. PMID: 40476345, PMCID: PMC12142580, DOI: 10.1111/jnc.70111.Peer-Reviewed Reviews, Practice Guidelines, Standards, and Consensus StatementsCysteine depletion triggers adipose tissue thermogenesis and weight loss
Lee A, Orliaguet L, Youm Y, Maeda R, Dlugos T, Lei Y, Coman D, Shchukina I, Andhey P, Smith S, Ravussin E, Stadler K, Chen B, Artyomov M, Hyder F, Horvath T, Schneeberger M, Sugiura Y, Dixit V. Cysteine depletion triggers adipose tissue thermogenesis and weight loss. Nature Metabolism 2025, 7: 1204-1222. PMID: 40461845, PMCID: PMC12198010, DOI: 10.1038/s42255-025-01297-8.Peer-Reviewed Original Research