Daniel Armendariz
Postdoctoral FellowAbout
Research
Publications
2025
Benchmarking and optimizing Perturb-seq in differentiating human pluripotent stem cells
Sivakumar S, Wang Y, Goetsch S, Pandit V, Wang L, Zhao H, Sundarrajan A, Armendariz D, Takeuchi C, Deng M, Nzima M, Chen W, Dederich A, Hayek L, Gao T, Gogate A, Kaur K, Kim H, McCoy M, Niederstrasser H, Oura S, Pinzon-Arteaga C, Sanghvi M, Schmitz D, Yu L, Zhang Y, Zhou Q, Kraus W, Xu L, Wu J, Posner B, Chahrour M, Hon G, Munshi N. Benchmarking and optimizing Perturb-seq in differentiating human pluripotent stem cells. Stem Cell Reports 2025, 20: 102713. PMID: 41237780, PMCID: PMC12744838, DOI: 10.1016/j.stemcr.2025.102713.Peer-Reviewed Original ResearchEnhancer regulatory networks globally connect non-coding breast cancer loci to cancer genes
Wang Y, Armendariz D, Wang L, Zhao H, Xie S, Hon G. Enhancer regulatory networks globally connect non-coding breast cancer loci to cancer genes. Genome Biology 2025, 26: 10. PMID: 39825430, PMCID: PMC11740497, DOI: 10.1186/s13059-025-03474-0.Peer-Reviewed Original Research
2022
Computational identification of clonal cells in single-cell CRISPR screens
Wang Y, Xie S, Armendariz D, Hon G. Computational identification of clonal cells in single-cell CRISPR screens. BMC Genomics 2022, 23: 135. PMID: 35168568, PMCID: PMC8845350, DOI: 10.1186/s12864-022-08359-1.Peer-Reviewed Original Research
2020
Identification and characterization of cellular heterogeneity within the developing renal interstitium
England A, Chaney C, Das A, Patel M, Malewska A, Armendariz D, Hon G, Strand D, Drake K, Carroll T. Identification and characterization of cellular heterogeneity within the developing renal interstitium. Development 2020, 147: dev190108. PMID: 32586976, PMCID: PMC7438011, DOI: 10.1242/dev.190108.Peer-Reviewed Original Research
2019
Global Analysis of Enhancer Targets Reveals Convergent Enhancer-Driven Regulatory Modules
Xie S, Armendariz D, Zhou P, Duan J, Hon G. Global Analysis of Enhancer Targets Reveals Convergent Enhancer-Driven Regulatory Modules. Cell Reports 2019, 29: 2570-2578.e5. PMID: 31775028, PMCID: PMC6904118, DOI: 10.1016/j.celrep.2019.10.073.Peer-Reviewed Original Research
2018
Frequent sgRNA-barcode recombination in single-cell perturbation assays
Xie S, Cooley A, Armendariz D, Zhou P, Hon G. Frequent sgRNA-barcode recombination in single-cell perturbation assays. PLOS ONE 2018, 13: e0198635. PMID: 29874289, PMCID: PMC5991360, DOI: 10.1371/journal.pone.0198635.Peer-Reviewed Original Research