2020
Strategies to enable large-scale proteomics for reproducible research
Poulos R, Hains P, Shah R, Lucas N, Xavier D, Manda S, Anees A, Koh J, Mahboob S, Wittman M, Williams S, Sykes E, Hecker M, Dausmann M, Wouters M, Ashman K, Yang J, Wild P, deFazio A, Balleine R, Tully B, Aebersold R, Speed T, Liu Y, Reddel R, Robinson P, Zhong Q. Strategies to enable large-scale proteomics for reproducible research. Nature Communications 2020, 11: 3793. PMID: 32732981, PMCID: PMC7393074, DOI: 10.1038/s41467-020-17641-3.Peer-Reviewed Original Research
2017
Comparison of targeted proteomics approaches for detecting and quantifying proteins derived from human cancer tissues
Faktor J, Sucha R, Paralova V, Liu Y, Bouchal P. Comparison of targeted proteomics approaches for detecting and quantifying proteins derived from human cancer tissues. Proteomics 2017, 17 PMID: 27966270, DOI: 10.1002/pmic.201600323.Peer-Reviewed Original ResearchConceptsDifferent clinical-pathological characteristicsClinical pathological characteristicsHuman cancer tissuesClinical studiesCancer tissuesBreast tumorsTumor tissueCoefficient of varianceNumerous conditionsCancer researchMass spectrometry-based proteomic approachMultiple protein analytesProteomic approachTissueSequential window acquisition
2014
Glycoproteomic Analysis of Prostate Cancer Tissues by SWATH Mass Spectrometry Discovers N-acylethanolamine Acid Amidase and Protein Tyrosine Kinase 7 as Signatures for Tumor Aggressiveness*
Liu Y, Chen J, Sethi A, Li QK, Chen L, Collins B, Gillet LC, Wollscheid B, Zhang H, Aebersold R. Glycoproteomic Analysis of Prostate Cancer Tissues by SWATH Mass Spectrometry Discovers N-acylethanolamine Acid Amidase and Protein Tyrosine Kinase 7 as Signatures for Tumor Aggressiveness*. Molecular & Cellular Proteomics 2014, 13: 1753-1768. PMID: 24741114, PMCID: PMC4083113, DOI: 10.1074/mcp.m114.038273.Peer-Reviewed Original ResearchConceptsN-acylethanolamine acid amidaseProtein tyrosine kinase 7Non-aggressive prostate cancerTyrosine kinase 7Prostate cancerKinase 7N-glycositesDiverse biological processesPotential tissue biomarkersAggressive prostate cancerPCa tumor tissuesSWATH mass spectrometryTissue microarray analysisProstate cancer tissuesUrgent clinical needIdentification of biomarkersHuman proteomePCa aggressivenessMicroarray analysisBiological processesPCa casesTissue biomarkersTumor aggressivenessNormal prostateCancer tissues
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