2023
A pipeline for the retrieval and extraction of domain-specific information with application to COVID-19 immune signatures
Newton A, Chartash D, Kleinstein S, McDougal R. A pipeline for the retrieval and extraction of domain-specific information with application to COVID-19 immune signatures. BMC Bioinformatics 2023, 24: 292. PMID: 37474900, PMCID: PMC10357743, DOI: 10.1186/s12859-023-05397-8.Peer-Reviewed Original ResearchConceptsDomain-specific informationDocument embeddingsSVM classifierSemi-structured representationsTraining setWeb-based formKnowledge repositoryInformation modelAutomatic analysisClassifier predictionsClassifierSignature informationAutomated systemBiomedical publicationsPaper authorsEmbeddingIncomplete information modelLiterature miningIterative processSpecific informationSuch informationInformationLimited setSetQueries
2021
Training and validation of a deep learning architecture for the automatic analysis of coronary angiography.
Du T, Xie L, Zhang H, Liu X, Wang X, Chen D, Xu Y, Sun Z, Zhou W, Song L, Guan C, Lansky AJ, Xu B. Training and validation of a deep learning architecture for the automatic analysis of coronary angiography. EuroIntervention 2021, 17: 32-40. PMID: 32830647, PMCID: PMC9753915, DOI: 10.4244/eij-d-20-00570.Peer-Reviewed Original ResearchConceptsDeep learning architectureLearning architectureDeep learningAutomatic recognitionF1 scoreRecognition accuracyAutomatic analysisData setsArchitectureMultimodal analysisRecognitionSingle aspectMultiple aspectsRecognition sensitivityRecent yearsLesion diameter stenosisMachineNetworkDiagnostic mapLearningData interpretationAccuracySetAspects
2008
Bringing Web 2.0 to bioinformatics
Zhang Z, Cheung KH, Townsend JP. Bringing Web 2.0 to bioinformatics. Briefings In Bioinformatics 2008, 10: 1-10. PMID: 18842678, PMCID: PMC2638627, DOI: 10.1093/bib/bbn041.Peer-Reviewed Reviews, Practice Guidelines, Standards, and Consensus StatementsConceptsData exchangeWeb 2.0Data integrationHeterogeneous data sourcesHarness collective intelligenceSharing of dataWeb 2.0 technologiesIntegration of dataMajor bioinformatics challengeWeb servicesData warehousingData creationData sharingCollaborative platformCollective intelligenceAutomatic analysisCommunication modelInformation technologyBioinformatics researchUsersData sourcesSharingMultiple sourcesBioinformatics challengesPlatform
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