2025
MiMeJF: Application of Coupled Matrix and Tensor Factorization (CMTF) for Enhanced Microbiome-Metabolome Multi-Omic Analysis
Ou Z, Fu X, Norbäck D, Lin R, Wen J, Sun Y. MiMeJF: Application of Coupled Matrix and Tensor Factorization (CMTF) for Enhanced Microbiome-Metabolome Multi-Omic Analysis. Metabolites 2025, 15: 51. PMID: 39852393, PMCID: PMC11767930, DOI: 10.3390/metabo15010051.Peer-Reviewed Original ResearchJoint analysis of microbiomeHuman gut samplesIntegration of microbiomeAnalysis of microbiomeMulti-omics datasetsBiologically meaningful biomarkersBiologically relevant insightsMulti-omics analysisMulti-omics integrationMetabolomics dataMicrobial taxaPathway abundanceGut samplesFunctional pathwaysBiological processesInflammatory bowel diseaseMicrobiomeBiomarker identificationBiologyPyroglutamic acidTaxaJoint analysisMetabolomicsBiomarker detectionAbundance
2021
Analyzing gut microbiota composition in individual Anopheles mosquitoes after experimental treatment
Fofana A, Gendrin M, Romoli O, Yarbanga G, Ouédraogo G, Yerbanga R, Ouédraogo J. Analyzing gut microbiota composition in individual Anopheles mosquitoes after experimental treatment. IScience 2021, 24: 103416. PMID: 34901787, PMCID: PMC8637483, DOI: 10.1016/j.isci.2021.103416.Peer-Reviewed Original ResearchMosquito microbiotaHigh-throughput sequencing studiesHigh-throughput sequencingMosquito microbiomeMicrobiota compositionBlood digestionSemi-field conditionsMajor generaSequencing studiesGut samplesReduced microbial loadRelative abundanceMalaria transmissionOverall microbiota compositionBlood mealGut microbiota compositionInfluence of amoxicillinAnopheles mosquitoesAdult femalesNegative control dataMicrobiotaAntibiotic treatmentSpecific decreaseAmoxicillin preparationsMicrobial load
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