Armita Nourmohammad
Associate Professor of Immunobiology and Biomedical EngineeringCards
About
Research
Publications
2026
Replaying germinal center evolution on a quantified affinity landscape
DeWitt W, Vora A, Araki T, Galloway J, Alkutkar T, Bortolatto J, Castro T, Dumm W, Jennings-Shaffer C, Jia T, Mesin L, Ozorowski G, Pae J, Ralph D, Bloom J, Nourmohammad A, Song Y, Ward A, Starr T, Matsen F, Victora G. Replaying germinal center evolution on a quantified affinity landscape. Cell 2026 PMID: 42248140, DOI: 10.1016/j.cell.2026.05.013.Peer-Reviewed Original ResearchDesign principles of the cytotoxic CD8+ T cell response
Ukogu O, Montague Z, Altan-Bonnet G, Nourmohammad A. Design principles of the cytotoxic CD8+ T cell response. Proceedings Of The National Academy Of Sciences Of The United States Of America 2026, 123: e2528202123. PMID: 42030147, PMCID: PMC13123835, DOI: 10.1073/pnas.2528202123.Peer-Reviewed Original ResearchExperimental immunologists in the era of artificial intelligence
Wang Y, Ouyang W, Wang C, Nourmohammad A, Liu G, Wu N. Experimental immunologists in the era of artificial intelligence. Trends In Immunology 2026 PMID: 41856883, DOI: 10.1016/j.it.2026.01.003.Peer-Reviewed Reviews, Practice Guidelines, Standards, and Consensus Statements
2025
T cell receptor specificity landscape revealed through de novo peptide design
Visani G, Pun M, Minervina A, Bradley P, Thomas P, Nourmohammad A. T cell receptor specificity landscape revealed through de novo peptide design. Proceedings Of The National Academy Of Sciences Of The United States Of America 2025, 122: e2504783122. PMID: 41100668, PMCID: PMC12557503, DOI: 10.1073/pnas.2504783122.Peer-Reviewed Original ResearchDesign of high-specificity binders for peptide–MHC-I complexes
Liu B, Greenwood N, Bonzanini J, Motmaen A, Meyerberg J, Dao T, Xiang X, Ault R, Sharp J, Wang C, Visani G, Vafeados D, Roullier N, Nourmohammad A, Scheinberg D, Garcia K, Baker D. Design of high-specificity binders for peptide–MHC-I complexes. Science 2025, 389: 386-391. PMID: 40705892, PMCID: PMC13077772, DOI: 10.1126/science.adv0185.Peer-Reviewed Original Research
2024
Holographic-(V)AE: An end-to-end SO(3)-equivariant (variational) autoencoder in Fourier space
Visani G, Pun M, Angaji A, Nourmohammad A. Holographic-(V)AE: An end-to-end SO(3)-equivariant (variational) autoencoder in Fourier space. Physical Review Research 2024, 6: 023006. PMID: 39711614, PMCID: PMC11661850, DOI: 10.1103/physrevresearch.6.023006.Peer-Reviewed Original ResearchLocal and Global Variability in Developing Human T-Cell Repertoires
Isacchini G, Quiniou V, Barennes P, Mhanna V, Vantomme H, Stys P, Mariotti-Ferrandiz E, Klatzmann D, Walczak A, Mora T, Nourmohammad A. Local and Global Variability in Developing Human T-Cell Repertoires. PRX Life 2024, 2: 013011. PMID: 39582620, PMCID: PMC11583800, DOI: 10.1103/prxlife.2.013011.Peer-Reviewed Original ResearchLearning the shape of protein microenvironments with a holographic convolutional neural network
Pun M, Ivanov A, Bellamy Q, Montague Z, LaMont C, Bradley P, Otwinowski J, Nourmohammad A. Learning the shape of protein microenvironments with a holographic convolutional neural network. Proceedings Of The National Academy Of Sciences Of The United States Of America 2024, 121: e2300838121. PMID: 38300863, PMCID: PMC10861886, DOI: 10.1073/pnas.2300838121.Peer-Reviewed Original ResearchReversible, tunable epigenetic silencing of TCF1 generates flexibility in the T cell memory decision
Abadie K, Clark E, Valanparambil R, Ukogu O, Yang W, Daza R, Ng K, Fathima J, Wang A, Lee J, Nasti T, Bhandoola A, Nourmohammad A, Ahmed R, Shendure J, Cao J, Kueh H. Reversible, tunable epigenetic silencing of TCF1 generates flexibility in the T cell memory decision. Immunity 2024, 57: 271-286.e13. PMID: 38301652, PMCID: PMC10922671, DOI: 10.1016/j.immuni.2023.12.006.Peer-Reviewed Original Research
2023
Probabilities of developing HIV-1 bNAb sequence features in uninfected and chronically infected individuals
Kreer C, Lupo C, Ercanoglu M, Gieselmann L, Spisak N, Grossbach J, Schlotz M, Schommers P, Gruell H, Dold L, Beyer A, Nourmohammad A, Mora T, Walczak A, Klein F. Probabilities of developing HIV-1 bNAb sequence features in uninfected and chronically infected individuals. Nature Communications 2023, 14: 7137. PMID: 37932288, PMCID: PMC10628170, DOI: 10.1038/s41467-023-42906-y.Peer-Reviewed Original Research
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