2019
Multi‐site reproducibility of a human immunophenotyping assay in whole blood and peripheral blood mononuclear cells preparations using CyTOF technology coupled with Maxpar Pathsetter, an automated data analysis system
Bagwell CB, Hunsberger B, Hill B, Herbert D, Bray C, Selvanantham T, Li S, Villasboas JC, Pavelko K, Strausbauch M, Rahman A, Kelly G, Asgharzadeh S, Gomez‐Cabrero A, Behbehani G, Chang H, Lyberger J, Montgomery R, Zhao Y, Inokuma M, Goldberger O, Stelzer G. Multi‐site reproducibility of a human immunophenotyping assay in whole blood and peripheral blood mononuclear cells preparations using CyTOF technology coupled with Maxpar Pathsetter, an automated data analysis system. Cytometry Part B Clinical Cytometry 2019, 98: 146-160. PMID: 31758746, PMCID: PMC7543682, DOI: 10.1002/cyto.b.21858.Peer-Reviewed Original ResearchConceptsPeripheral blood mononuclear cellsWhole bloodPeripheral blood mononuclear cell preparationsDeep immune phenotypingBlood mononuclear cellsImmune cell populationsMononuclear cell preparationsCell populationsTranslational clinical researchWhole blood preparationsImmune phenotypingMononuclear cellsPBMC samplesClinical trialsImmune cellsClinical researchCyTOF technologyBlood preparationsInter-site reproducibilityBloodCell preparationsSingle donorMulti-site reproducibilityCellsProfiling assaysA Modified Injector and Sample Acquisition Protocol Can Improve Data Quality and Reduce Inter‐Instrument Variability of the Helios Mass Cytometer
Lee BH, Kelly G, Bradford S, Davila M, Guo XV, Amir E, Thrash EM, Solga MD, Lannigan J, Sellers B, Candia J, Tsang J, Montgomery RR, Tamaki SJ, Sigdel TK, Sarwal MM, Lanier LL, Tian Y, Kim C, Hinz D, Peters B, Sette A, Rahman AH. A Modified Injector and Sample Acquisition Protocol Can Improve Data Quality and Reduce Inter‐Instrument Variability of the Helios Mass Cytometer. Cytometry Part A 2019, 95: 1019-1030. PMID: 31364278, PMCID: PMC6750971, DOI: 10.1002/cyto.a.23866.Peer-Reviewed Original ResearchAntibodiesFlow CytometryHumansImmunophenotypingLeukocytes, MononuclearLymphocytesReproducibility of ResultsSingle-Cell AnalysisDevelopment of a 2-dimensional atlas of the human kidney with imaging mass cytometry
Singh N, Avigan ZM, Kliegel JA, Shuch BM, Montgomery RR, Moeckel GW, Cantley LG. Development of a 2-dimensional atlas of the human kidney with imaging mass cytometry. JCI Insight 2019, 4: e129477. PMID: 31217358, PMCID: PMC6629112, DOI: 10.1172/jci.insight.129477.Peer-Reviewed Original ResearchMeSH KeywordsAdultAgedAntibodiesAtlases as TopicFemaleHumansImage CytometryKidneyKidney NeoplasmsMachine LearningMaleMiddle AgedModels, AnatomicReproducibility of ResultsConceptsCell typesIndividual cell typesCritical baseline dataRenal cell typesMass cytometryQuantitative atlasNormal human samplesHuman kidneyRelative abundanceDevelopment of therapiesHuman kidney diseaseKidney diseaseMetal-conjugated antibodiesQuantitative interrogationScarce samplesMachine-learning pipelineDiscovery purposesFuture quantitative analysisNovel abnormalityNormal human kidneySingle tissue sectionHuman samplesRenal biopsyImmune cellsCells
2017
Gating mass cytometry data by deep learning
Li H, Shaham U, Stanton KP, Yao Y, Montgomery RR, Kluger Y. Gating mass cytometry data by deep learning. Bioinformatics 2017, 33: 3423-3430. PMID: 29036374, PMCID: PMC5860171, DOI: 10.1093/bioinformatics/btx448.Peer-Reviewed Original Research