Publications

2024

• Geometric scattering on measure spacesChew J, Hirn M, Krishnaswamy S, Needell D, Perlmutter M, Steach H, Viswanath S, Wu H. Geometric scattering on measure spaces. Applied And Computational Harmonic Analysis 2024, 70: 101635. DOI: 10.1016/j.acha.2024.101635.
• Geometric scattering on measure spacesChew J, Hirn M, Krishnaswamy S, Needell D, Perlmutter M, Steach H, Viswanath S, Wu H. Geometric scattering on measure spaces. Applied And Computational Harmonic Analysis 2024, 70: 101635. DOI: 10.1016/j.acha.2024.101635.
• Directed Scattering for Knowledge Graph-Based Cellular Signaling AnalysisVenkat A, Chew J, Rodriguez F, Tape C, Perlmutter M, Krishnaswamy S. Directed Scattering for Knowledge Graph-Based Cellular Signaling Analysis. 2024, 9761-9765. DOI: 10.1109/icassp48485.2024.10446530.
• Directed Scattering for Knowledge Graph-Based Cellular Signaling AnalysisVenkat A, Chew J, Rodriguez F, Tape C, Perlmutter M, Krishnaswamy S. Directed Scattering for Knowledge Graph-Based Cellular Signaling Analysis. 2024, 9761-9765. DOI: 10.1109/icassp48485.2024.10446530.
• Abstract 7117: Convection enhanced delivery of a novel ATR inhibitor synergizes with systemic lomustine for improved treatment of glioblastomaJosowitz A, Lee T, Sundaram R, Pothupitiya J, Brown E, Sule A, Beckta J, Wang Y, Vacca J, Gilad O, Bindra R, Saltzman W. Abstract 7117: Convection enhanced delivery of a novel ATR inhibitor synergizes with systemic lomustine for improved treatment of glioblastoma. Cancer Research 2024, 84: 7117-7117. DOI: 10.1158/1538-7445.am2024-7117.
• Abstract 7123: Biomarker-targeted alkylator and DNA damage repair inhibitor combination for refractory and relapsed acute myeloid leukemia (AML)Bhardwaj P, Sundaram R, Baassiri A, Matthews M, VanOudenhove J, Gueble S, Halene S, Bindra R. Abstract 7123: Biomarker-targeted alkylator and DNA damage repair inhibitor combination for refractory and relapsed acute myeloid leukemia (AML). Cancer Research 2024, 84: 7123-7123. DOI: 10.1158/1538-7445.am2024-7123.
• Transcription elongation defects link oncogenic SF3B1 mutations to targetable alterations in chromatin landscapeBoddu P, Gupta A, Roy R, De La Peña Avalos B, Olazabal-Herrero A, Neuenkirchen N, Zimmer J, Chandhok N, King D, Nannya Y, Ogawa S, Lin H, Simon M, Dray E, Kupfer G, Verma A, Neugebauer K, Pillai M. Transcription elongation defects link oncogenic SF3B1 mutations to targetable alterations in chromatin landscape. Molecular Cell 2024 PMID: 38521065, DOI: 10.1016/j.molcel.2024.02.032.
• Intestinal tuft cell immune privilege enables norovirus persistenceStrine M, Fagerberg E, Darcy P, Barrón G, Filler R, Alfajaro M, D'Angelo-Gavrish N, Wang F, Graziano V, Menasché B, Damo M, Wang Y, Howitt M, Lee S, Joshi N, Mucida D, Wilen C. Intestinal tuft cell immune privilege enables norovirus persistence. Science Immunology 2024, 9: eadi7038. PMID: 38517952, DOI: 10.1126/sciimmunol.adi7038.
• Abstract 3632: Cytokine profiles associated with ICI myocarditis using machine learning approaches identifies novel cytokines and implicated pathwaysChehayeb R, Hong D, Chen N, Martinez C, Jayakrishnan R, Guajardo A, Lin D, Im Y, Halene S, VanOudenhove J, Hwa J, Jha A, Kwan J. Abstract 3632: Cytokine profiles associated with ICI myocarditis using machine learning approaches identifies novel cytokines and implicated pathways. Cancer Research 2024, 84: 3632-3632. DOI: 10.1158/1538-7445.am2024-3632.
• Abstract 4013: Increasing mitochondrial respiration by silencing MCJ/DnaJC15 enhances CD8 CAR-T cell therapy efficacyWu M, Giddings E, Valenca-Pereira F, Pham-Danis C, Cendali F, Yarnell M, Novak A, Henao-Mejia J, Flavell R, D'Alessandro A, Kohler M, Rincon M. Abstract 4013: Increasing mitochondrial respiration by silencing MCJ/DnaJC15 enhances CD8 CAR-T cell therapy efficacy. Cancer Research 2024, 84: 4013-4013. DOI: 10.1158/1538-7445.am2024-4013.
• Abstract 3193: Utilizing a pH sensitive peptide (pHLIP) for antigen-directed T cell therapyYurkevicz A, Liu Y, Glazer P. Abstract 3193: Utilizing a pH sensitive peptide (pHLIP) for antigen-directed T cell therapy. Cancer Research 2024, 84: 3193-3193. DOI: 10.1158/1538-7445.am2024-3193.
• Abstract 7117: Convection enhanced delivery of a novel ATR inhibitor synergizes with systemic lomustine for improved treatment of glioblastomaJosowitz A, Lee T, Sundaram R, Pothupitiya J, Brown E, Sule A, Beckta J, Wang Y, Vacca J, Gilad O, Bindra R, Saltzman W. Abstract 7117: Convection enhanced delivery of a novel ATR inhibitor synergizes with systemic lomustine for improved treatment of glioblastoma. Cancer Research 2024, 84: 7117-7117. DOI: 10.1158/1538-7445.am2024-7117.
• Abstract 7123: Biomarker-targeted alkylator and DNA damage repair inhibitor combination for refractory and relapsed acute myeloid leukemia (AML)Bhardwaj P, Sundaram R, Baassiri A, Matthews M, VanOudenhove J, Gueble S, Halene S, Bindra R. Abstract 7123: Biomarker-targeted alkylator and DNA damage repair inhibitor combination for refractory and relapsed acute myeloid leukemia (AML). Cancer Research 2024, 84: 7123-7123. DOI: 10.1158/1538-7445.am2024-7123.
• Transcription elongation defects link oncogenic SF3B1 mutations to targetable alterations in chromatin landscapeBoddu P, Gupta A, Roy R, De La Peña Avalos B, Olazabal-Herrero A, Neuenkirchen N, Zimmer J, Chandhok N, King D, Nannya Y, Ogawa S, Lin H, Simon M, Dray E, Kupfer G, Verma A, Neugebauer K, Pillai M. Transcription elongation defects link oncogenic SF3B1 mutations to targetable alterations in chromatin landscape. Molecular Cell 2024 PMID: 38521065, DOI: 10.1016/j.molcel.2024.02.032.
• Intestinal tuft cell immune privilege enables norovirus persistenceStrine M, Fagerberg E, Darcy P, Barrón G, Filler R, Alfajaro M, D'Angelo-Gavrish N, Wang F, Graziano V, Menasché B, Damo M, Wang Y, Howitt M, Lee S, Joshi N, Mucida D, Wilen C. Intestinal tuft cell immune privilege enables norovirus persistence. Science Immunology 2024, 9: eadi7038. PMID: 38517952, DOI: 10.1126/sciimmunol.adi7038.
• Abstract 3632: Cytokine profiles associated with ICI myocarditis using machine learning approaches identifies novel cytokines and implicated pathwaysChehayeb R, Hong D, Chen N, Martinez C, Jayakrishnan R, Guajardo A, Lin D, Im Y, Halene S, VanOudenhove J, Hwa J, Jha A, Kwan J. Abstract 3632: Cytokine profiles associated with ICI myocarditis using machine learning approaches identifies novel cytokines and implicated pathways. Cancer Research 2024, 84: 3632-3632. DOI: 10.1158/1538-7445.am2024-3632.
• Abstract 4013: Increasing mitochondrial respiration by silencing MCJ/DnaJC15 enhances CD8 CAR-T cell therapy efficacyWu M, Giddings E, Valenca-Pereira F, Pham-Danis C, Cendali F, Yarnell M, Novak A, Henao-Mejia J, Flavell R, D'Alessandro A, Kohler M, Rincon M. Abstract 4013: Increasing mitochondrial respiration by silencing MCJ/DnaJC15 enhances CD8 CAR-T cell therapy efficacy. Cancer Research 2024, 84: 4013-4013. DOI: 10.1158/1538-7445.am2024-4013.
• Abstract 3193: Utilizing a pH sensitive peptide (pHLIP) for antigen-directed T cell therapyYurkevicz A, Liu Y, Glazer P. Abstract 3193: Utilizing a pH sensitive peptide (pHLIP) for antigen-directed T cell therapy. Cancer Research 2024, 84: 3193-3193. DOI: 10.1158/1538-7445.am2024-3193.
• An immunophenotype-coupled transcriptomic atlas of human hematopoietic progenitorsZhang X, Song B, Carlino M, Li G, Ferchen K, Chen M, Thompson E, Kain B, Schnell D, Thakkar K, Kouril M, Jin K, Hay S, Sen S, Bernardicius D, Ma S, Bennett S, Croteau J, Salvatori O, Lye M, Gillen A, Jordan C, Singh H, Krause D, Salomonis N, Grimes H. An immunophenotype-coupled transcriptomic atlas of human hematopoietic progenitors. Nature Immunology 2024, 25: 703-715. PMID: 38514887, PMCID: PMC11003869, DOI: 10.1038/s41590-024-01782-4.
• An immunophenotype-coupled transcriptomic atlas of human hematopoietic progenitorsZhang X, Song B, Carlino M, Li G, Ferchen K, Chen M, Thompson E, Kain B, Schnell D, Thakkar K, Kouril M, Jin K, Hay S, Sen S, Bernardicius D, Ma S, Bennett S, Croteau J, Salvatori O, Lye M, Gillen A, Jordan C, Singh H, Krause D, Salomonis N, Grimes H. An immunophenotype-coupled transcriptomic atlas of human hematopoietic progenitors. Nature Immunology 2024, 25: 703-715. PMID: 38514887, PMCID: PMC11003869, DOI: 10.1038/s41590-024-01782-4.
• Dedifferentiated early postnatal lung myofibroblasts redifferentiate in adult diseaseChandran R, Adams T, Kabir I, Gallardo-Vara E, Kaminski N, Gomperts B, Greif D. Dedifferentiated early postnatal lung myofibroblasts redifferentiate in adult disease. Frontiers In Cell And Developmental Biology 2024, 12: 1335061. PMID: 38572485, PMCID: PMC10987733, DOI: 10.3389/fcell.2024.1335061.
• Co-transcriptional gene regulation in eukaryotes and prokaryotesShine M, Gordon J, Schärfen L, Zigackova D, Herzel L, Neugebauer K. Co-transcriptional gene regulation in eukaryotes and prokaryotes. Nature Reviews Molecular Cell Biology 2024, 1-21. PMID: 38509203, DOI: 10.1038/s41580-024-00706-2.
• Latent evolutionary signatures: a general framework for analysing music and cultural evolutionWarrell J, Salichos L, Gancz M, Gerstein M. Latent evolutionary signatures: a general framework for analysing music and cultural evolution. Journal Of The Royal Society Interface 2024, 21: 20230647. PMID: 38503341, PMCID: PMC10950459, DOI: 10.1098/rsif.2023.0647.
• Dedifferentiated early postnatal lung myofibroblasts redifferentiate in adult diseaseChandran R, Adams T, Kabir I, Gallardo-Vara E, Kaminski N, Gomperts B, Greif D. Dedifferentiated early postnatal lung myofibroblasts redifferentiate in adult disease. Frontiers In Cell And Developmental Biology 2024, 12: 1335061. PMID: 38572485, PMCID: PMC10987733, DOI: 10.3389/fcell.2024.1335061.
• Co-transcriptional gene regulation in eukaryotes and prokaryotesShine M, Gordon J, Schärfen L, Zigackova D, Herzel L, Neugebauer K. Co-transcriptional gene regulation in eukaryotes and prokaryotes. Nature Reviews Molecular Cell Biology 2024, 1-21. PMID: 38509203, DOI: 10.1038/s41580-024-00706-2.
• Latent evolutionary signatures: a general framework for analysing music and cultural evolutionWarrell J, Salichos L, Gancz M, Gerstein M. Latent evolutionary signatures: a general framework for analysing music and cultural evolution. Journal Of The Royal Society Interface 2024, 21: 20230647. PMID: 38503341, PMCID: PMC10950459, DOI: 10.1098/rsif.2023.0647.
• Multicenter integrated analysis of noncoding CRISPRi screensYao D, Tycko J, Oh J, Bounds L, Gosai S, Lataniotis L, Mackay-Smith A, Doughty B, Gabdank I, Schmidt H, Guerrero-Altamirano T, Siklenka K, Guo K, White A, Youngworth I, Andreeva K, Ren X, Barrera A, Luo Y, Yardımcı G, Tewhey R, Kundaje A, Greenleaf W, Sabeti P, Leslie C, Pritykin Y, Moore J, Beer M, Gersbach C, Reddy T, Shen Y, Engreitz J, Bassik M, Reilly S. Multicenter integrated analysis of noncoding CRISPRi screens. Nature Methods 2024, 21: 723-734. PMID: 38504114, PMCID: PMC11009116, DOI: 10.1038/s41592-024-02216-7.
• Resurgence of Dengue in the Era of Genomic Surveillance and Vaccines.Huits R, Grubaugh N, Libman M, Hamer D. Resurgence of Dengue in the Era of Genomic Surveillance and Vaccines. Annals Of Internal Medicine 2024 PMID: 38498879, DOI: 10.7326/m24-0496.
• Multicenter integrated analysis of noncoding CRISPRi screensYao D, Tycko J, Oh J, Bounds L, Gosai S, Lataniotis L, Mackay-Smith A, Doughty B, Gabdank I, Schmidt H, Guerrero-Altamirano T, Siklenka K, Guo K, White A, Youngworth I, Andreeva K, Ren X, Barrera A, Luo Y, Yardımcı G, Tewhey R, Kundaje A, Greenleaf W, Sabeti P, Leslie C, Pritykin Y, Moore J, Beer M, Gersbach C, Reddy T, Shen Y, Engreitz J, Bassik M, Reilly S. Multicenter integrated analysis of noncoding CRISPRi screens. Nature Methods 2024, 21: 723-734. PMID: 38504114, PMCID: PMC11009116, DOI: 10.1038/s41592-024-02216-7.
• Resurgence of Dengue in the Era of Genomic Surveillance and Vaccines.Huits R, Grubaugh N, Libman M, Hamer D. Resurgence of Dengue in the Era of Genomic Surveillance and Vaccines. Annals Of Internal Medicine 2024 PMID: 38498879, DOI: 10.7326/m24-0496.
• Learnable Filters for Geometric Scattering ModulesTong A, Wenkel F, Bhaskar D, Macdonald K, Grady J, Perlmutter M, Krishnaswamy S, Wolf G. Learnable Filters for Geometric Scattering Modules. IEEE Transactions On Signal Processing 2024, PP: 1-15. DOI: 10.1109/tsp.2024.3378001.
• Learnable Filters for Geometric Scattering ModulesTong A, Wenkel F, Bhaskar D, Macdonald K, Grady J, Perlmutter M, Krishnaswamy S, Wolf G. Learnable Filters for Geometric Scattering Modules. IEEE Transactions On Signal Processing 2024, PP: 1-15. DOI: 10.1109/tsp.2024.3378001.
• Oleic acid differentially affects lipid droplet storage of de novo synthesized lipids in hepatocytes and adipocytesCastillo H, Shuster S, Tarekegn L, Davis C. Oleic acid differentially affects lipid droplet storage of de novo synthesized lipids in hepatocytes and adipocytes. Chemical Communications 2024, 60: 3138-3141. PMID: 38329230, PMCID: PMC10939124, DOI: 10.1039/d3cc04829b.
• Factors Associated with Long COVID: Insights from Two Nationwide SurveysWu Y, Sawano M, Wu Y, Shah R, Bishop P, Iwasaki A, Krumholz H. Factors Associated with Long COVID: Insights from Two Nationwide Surveys. The American Journal Of Medicine 2024 PMID: 38490304, DOI: 10.1016/j.amjmed.2024.02.032.
• Oleic acid differentially affects lipid droplet storage of de novo synthesized lipids in hepatocytes and adipocytesCastillo H, Shuster S, Tarekegn L, Davis C. Oleic acid differentially affects lipid droplet storage of de novo synthesized lipids in hepatocytes and adipocytes. Chemical Communications 2024, 60: 3138-3141. PMID: 38329230, PMCID: PMC10939124, DOI: 10.1039/d3cc04829b.
• Factors Associated with Long COVID: Insights from Two Nationwide SurveysWu Y, Sawano M, Wu Y, Shah R, Bishop P, Iwasaki A, Krumholz H. Factors Associated with Long COVID: Insights from Two Nationwide Surveys. The American Journal Of Medicine 2024 PMID: 38490304, DOI: 10.1016/j.amjmed.2024.02.032.
• Correction: Cell cycle controls long-range calcium signaling in the regenerating epidermisMoore J, Bhaskar D, Gao F, Matte-Martone C, Du S, Lathrop E, Ganesan S, Shao L, Norris R, Sanz N, Annusver K, Kasper M, Cox A, Hendry C, Rieck B, Krishnaswamy S, Greco V. Correction: Cell cycle controls long-range calcium signaling in the regenerating epidermis. Journal Of Cell Biology 2024, 223: e20230209503052024c. PMID: 38477880, PMCID: PMC10938063, DOI: 10.1083/jcb.20230209503052024c.
• De novo-designed transmembrane proteins bind and regulate a cytokine receptorMravic M, He L, Kratochvil H, Hu H, Nick S, Bai W, Edwards A, Jo H, Wu Y, DiMaio D, DeGrado W. De novo-designed transmembrane proteins bind and regulate a cytokine receptor. Nature Chemical Biology 2024, 1-10. PMID: 38480980, DOI: 10.1038/s41589-024-01562-z.
• MLL1 regulates cytokine-driven cell migration and metastasisNair P, Danilova L, Gómez-de-Mariscal E, Kim D, Fan R, Muñoz-Barrutia A, Fertig E, Wirtz D. MLL1 regulates cytokine-driven cell migration and metastasis. Science Advances 2024, 10: eadk0785. PMID: 38478601, PMCID: PMC10936879, DOI: 10.1126/sciadv.adk0785.
• Correction: Cell cycle controls long-range calcium signaling in the regenerating epidermisMoore J, Bhaskar D, Gao F, Matte-Martone C, Du S, Lathrop E, Ganesan S, Shao L, Norris R, Sanz N, Annusver K, Kasper M, Cox A, Hendry C, Rieck B, Krishnaswamy S, Greco V. Correction: Cell cycle controls long-range calcium signaling in the regenerating epidermis. Journal Of Cell Biology 2024, 223: e20230209503052024c. PMID: 38477880, PMCID: PMC10938063, DOI: 10.1083/jcb.20230209503052024c.
• De novo-designed transmembrane proteins bind and regulate a cytokine receptorMravic M, He L, Kratochvil H, Hu H, Nick S, Bai W, Edwards A, Jo H, Wu Y, DiMaio D, DeGrado W. De novo-designed transmembrane proteins bind and regulate a cytokine receptor. Nature Chemical Biology 2024, 1-10. PMID: 38480980, DOI: 10.1038/s41589-024-01562-z.
• MLL1 regulates cytokine-driven cell migration and metastasisNair P, Danilova L, Gómez-de-Mariscal E, Kim D, Fan R, Muñoz-Barrutia A, Fertig E, Wirtz D. MLL1 regulates cytokine-driven cell migration and metastasis. Science Advances 2024, 10: eadk0785. PMID: 38478601, PMCID: PMC10936879, DOI: 10.1126/sciadv.adk0785.
• Polarized localization of kinesin-1 and RIC-7 drives axonal mitochondria anterograde transportWu Y, Ding C, Sharif B, Weinreb A, Swaim G, Hao H, Yogev S, Watanabe S, Hammarlund M. Polarized localization of kinesin-1 and RIC-7 drives axonal mitochondria anterograde transport. Journal Of Cell Biology 2024, 223: e202305105. PMID: 38470363, PMCID: PMC10932739, DOI: 10.1083/jcb.202305105.
• Polarized localization of kinesin-1 and RIC-7 drives axonal mitochondria anterograde transportWu Y, Ding C, Sharif B, Weinreb A, Swaim G, Hao H, Yogev S, Watanabe S, Hammarlund M. Polarized localization of kinesin-1 and RIC-7 drives axonal mitochondria anterograde transport. Journal Of Cell Biology 2024, 223: e202305105. PMID: 38470363, PMCID: PMC10932739, DOI: 10.1083/jcb.202305105.
• Rational Design of TDP-43 Derived α‑Helical Peptide Inhibitors: An In Silico Strategy to Prevent TDP-43 Aggregation in Neurodegenerative DisordersSalaikumaran M, Gopal P. Rational Design of TDP-43 Derived α‑Helical Peptide Inhibitors: An In Silico Strategy to Prevent TDP-43 Aggregation in Neurodegenerative Disorders. ACS Chemical Neuroscience 2024, 15: 1096-1109. PMID: 38466778, PMCID: PMC10959110, DOI: 10.1021/acschemneuro.3c00659.
• Low antibody levels associated with significantly increased rate of SARS‐CoV‐2 infection in a highly vaccinated population from the US National Basketball AssociationTai C, Haviland M, Kissler S, Lucia R, Merson M, Maragakis L, Ho D, Anderson D, DiFiori J, Grubaugh N, Grad Y, Mack C. Low antibody levels associated with significantly increased rate of SARS‐CoV‐2 infection in a highly vaccinated population from the US National Basketball Association. Journal Of Medical Virology 2024, 96: e29505. PMID: 38465748, DOI: 10.1002/jmv.29505.
• Rational Design of TDP-43 Derived α‑Helical Peptide Inhibitors: An In Silico Strategy to Prevent TDP-43 Aggregation in Neurodegenerative DisordersSalaikumaran M, Gopal P. Rational Design of TDP-43 Derived α‑Helical Peptide Inhibitors: An In Silico Strategy to Prevent TDP-43 Aggregation in Neurodegenerative Disorders. ACS Chemical Neuroscience 2024, 15: 1096-1109. PMID: 38466778, PMCID: PMC10959110, DOI: 10.1021/acschemneuro.3c00659.
• Low antibody levels associated with significantly increased rate of SARS‐CoV‐2 infection in a highly vaccinated population from the US National Basketball AssociationTai C, Haviland M, Kissler S, Lucia R, Merson M, Maragakis L, Ho D, Anderson D, DiFiori J, Grubaugh N, Grad Y, Mack C. Low antibody levels associated with significantly increased rate of SARS‐CoV‐2 infection in a highly vaccinated population from the US National Basketball Association. Journal Of Medical Virology 2024, 96: e29505. PMID: 38465748, DOI: 10.1002/jmv.29505.
• Genome-wide CRISPR activation screen identifies JADE3 as an antiviral activator of NF-kB–dependent IFITM3 expressionMunir M, Embry A, Doench J, Heaton N, Wilen C, Orchard R. Genome-wide CRISPR activation screen identifies JADE3 as an antiviral activator of NF-kB–dependent IFITM3 expression. Journal Of Biological Chemistry 2024, 300: 107153. PMID: 38462163, PMCID: PMC11001640, DOI: 10.1016/j.jbc.2024.107153.
• Genome-wide CRISPR activation screen identifies JADE3 as an antiviral activator of NF-kB–dependent IFITM3 expressionMunir M, Embry A, Doench J, Heaton N, Wilen C, Orchard R. Genome-wide CRISPR activation screen identifies JADE3 as an antiviral activator of NF-kB–dependent IFITM3 expression. Journal Of Biological Chemistry 2024, 300: 107153. PMID: 38462163, PMCID: PMC11001640, DOI: 10.1016/j.jbc.2024.107153.
• microRNA-33 controls hunger signaling in hypothalamic AgRP neuronsPrice N, Fernández-Tussy P, Varela L, Cardelo M, Shanabrough M, Aryal B, de Cabo R, Suárez Y, Horvath T, Fernández-Hernando C. microRNA-33 controls hunger signaling in hypothalamic AgRP neurons. Nature Communications 2024, 15: 2131. PMID: 38459068, PMCID: PMC10923783, DOI: 10.1038/s41467-024-46427-0.
• microRNA-33 controls hunger signaling in hypothalamic AgRP neuronsPrice N, Fernández-Tussy P, Varela L, Cardelo M, Shanabrough M, Aryal B, de Cabo R, Suárez Y, Horvath T, Fernández-Hernando C. microRNA-33 controls hunger signaling in hypothalamic AgRP neurons. Nature Communications 2024, 15: 2131. PMID: 38459068, PMCID: PMC10923783, DOI: 10.1038/s41467-024-46427-0.
• Engineered mRNA–ribosome fusions for facile biosynthesis of selenoproteinsThaenert A, Sevostyanova A, Chung C, Vargas-Rodriguez O, Melnikov S, Söll D. Engineered mRNA–ribosome fusions for facile biosynthesis of selenoproteins. Proceedings Of The National Academy Of Sciences Of The United States Of America 2024, 121: e2321700121. PMID: 38442159, PMCID: PMC10945757, DOI: 10.1073/pnas.2321700121.
• Author Correction: Subclonal cooperation drives metastasis by modulating local and systemic immune microenvironmentsJaniszewska M, Tabassum D, Castaño Z, Cristea S, Yamamoto K, Kingston N, Murphy K, Shu S, Harper N, Del Alcazar C, Alečković M, Ekram M, Cohen O, Kwak M, Qin Y, Laszewski T, Luoma A, Marusyk A, Wucherpfennig K, Wagle N, Fan R, Michor F, McAllister S, Polyak K. Author Correction: Subclonal cooperation drives metastasis by modulating local and systemic immune microenvironments. Nature Cell Biology 2024, 1-1. PMID: 38443568, DOI: 10.1038/s41556-024-01385-z.
• Beyond reader proteins: RNA binding proteins and RNA modifications in conversation to regulate gene expressionFagre C, Gilbert W. Beyond reader proteins: RNA binding proteins and RNA modifications in conversation to regulate gene expression. Wiley Interdisciplinary Reviews - RNA 2024, 15: e1834. PMID: 38444048, DOI: 10.1002/wrna.1834.
• An epigenetic timer regulates the transition from cell division to cell expansion during Arabidopsis petal organogenesisHuang R, Irish V. An epigenetic timer regulates the transition from cell division to cell expansion during Arabidopsis petal organogenesis. PLOS Genetics 2024, 20: e1011203. PMID: 38442104, PMCID: PMC10942257, DOI: 10.1371/journal.pgen.1011203.
• Highly Reactive Group I Introns Ubiquitous in Pathogenic FungiLiu T, Pyle A. Highly Reactive Group I Introns Ubiquitous in Pathogenic Fungi. Journal Of Molecular Biology 2024, 436: 168513. PMID: 38447889, DOI: 10.1016/j.jmb.2024.168513.
• Engineered mRNA–ribosome fusions for facile biosynthesis of selenoproteinsThaenert A, Sevostyanova A, Chung C, Vargas-Rodriguez O, Melnikov S, Söll D. Engineered mRNA–ribosome fusions for facile biosynthesis of selenoproteins. Proceedings Of The National Academy Of Sciences Of The United States Of America 2024, 121: e2321700121. PMID: 38442159, PMCID: PMC10945757, DOI: 10.1073/pnas.2321700121.
• Author Correction: Subclonal cooperation drives metastasis by modulating local and systemic immune microenvironmentsJaniszewska M, Tabassum D, Castaño Z, Cristea S, Yamamoto K, Kingston N, Murphy K, Shu S, Harper N, Del Alcazar C, Alečković M, Ekram M, Cohen O, Kwak M, Qin Y, Laszewski T, Luoma A, Marusyk A, Wucherpfennig K, Wagle N, Fan R, Michor F, McAllister S, Polyak K. Author Correction: Subclonal cooperation drives metastasis by modulating local and systemic immune microenvironments. Nature Cell Biology 2024, 1-1. PMID: 38443568, DOI: 10.1038/s41556-024-01385-z.
• Beyond reader proteins: RNA binding proteins and RNA modifications in conversation to regulate gene expressionFagre C, Gilbert W. Beyond reader proteins: RNA binding proteins and RNA modifications in conversation to regulate gene expression. Wiley Interdisciplinary Reviews - RNA 2024, 15: e1834. PMID: 38444048, DOI: 10.1002/wrna.1834.
• An epigenetic timer regulates the transition from cell division to cell expansion during Arabidopsis petal organogenesisHuang R, Irish V. An epigenetic timer regulates the transition from cell division to cell expansion during Arabidopsis petal organogenesis. PLOS Genetics 2024, 20: e1011203. PMID: 38442104, PMCID: PMC10942257, DOI: 10.1371/journal.pgen.1011203.
• Highly Reactive Group I Introns Ubiquitous in Pathogenic FungiLiu T, Pyle A. Highly Reactive Group I Introns Ubiquitous in Pathogenic Fungi. Journal Of Molecular Biology 2024, 436: 168513. PMID: 38447889, DOI: 10.1016/j.jmb.2024.168513.
• Abstract P03: Splicing factor mutations induce stress granule upregulation in myeloid malignanciesBiancon G, Busarello E, Cheng M, Baccon D, VanOudenhove J, Ciceri F, Tebaldi T, Halene S. Abstract P03: Splicing factor mutations induce stress granule upregulation in myeloid malignancies. Blood Cancer Discovery 2024, 5: p03-p03. DOI: 10.1158/2643-3249.bcdsymp24-p03.
• Abstract P09: Splicing and translation in chronic myeloid leukemia cells adapting to bone marrow microenvironment and chemotherapyKozlowska E, Serwa R, Shine M, Wolczyk M, Pilanc-Kudlek P, Kominek A, Le B, Walejewska E, Idaszek J, Swieszkowski W, Piwocka K, Skorski T, Neugebauer K, Podszywalow-Bartnicka P. Abstract P09: Splicing and translation in chronic myeloid leukemia cells adapting to bone marrow microenvironment and chemotherapy. Blood Cancer Discovery 2024, 5: p09-p09. DOI: 10.1158/2643-3249.bcdsymp24-p09.
• Abstract P03: Splicing factor mutations induce stress granule upregulation in myeloid malignanciesBiancon G, Busarello E, Cheng M, Baccon D, VanOudenhove J, Ciceri F, Tebaldi T, Halene S. Abstract P03: Splicing factor mutations induce stress granule upregulation in myeloid malignancies. Blood Cancer Discovery 2024, 5: p03-p03. DOI: 10.1158/2643-3249.bcdsymp24-p03.
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