2024
Comprehensive evaluation and practical guideline of gating methods for high-dimensional cytometry data: manual gating, unsupervised clustering, and auto-gating
Liu P, Pan Y, Chang H, Wang W, Fang Y, Xue X, Zou J, Toothaker J, Olaloye O, Santiago E, McCourt B, Mitsialis V, Presicce P, Kallapur S, Snapper S, Liu J, Tseng G, Konnikova L, Liu S. Comprehensive evaluation and practical guideline of gating methods for high-dimensional cytometry data: manual gating, unsupervised clustering, and auto-gating. Briefings In Bioinformatics 2024, 26: bbae633. PMID: 39656848, PMCID: PMC11630031, DOI: 10.1093/bib/bbae633.Peer-Reviewed Original Research
2020
Artificial-cell-type aware cell-type classification in CITE-seq
Lian Q, Xin H, Ma J, Konnikova L, Chen W, Gu J, Chen K. Artificial-cell-type aware cell-type classification in CITE-seq. Bioinformatics 2020, 36: i542-i550. PMID: 32657383, PMCID: PMC7355304, DOI: 10.1093/bioinformatics/btaa467.Peer-Reviewed Original Research