2023
Automated and manual segmentation of the hippocampus in human infants
Fel J, Ellis C, Turk-Browne N. Automated and manual segmentation of the hippocampus in human infants. Developmental Cognitive Neuroscience 2023, 60: 101203. PMID: 36791555, PMCID: PMC9957787, DOI: 10.1016/j.dcn.2023.101203.Peer-Reviewed Original ResearchMeSH KeywordsAdultHippocampusHumansImage Processing, Computer-AssistedInfantMagnetic Resonance ImagingReproducibility of ResultsConceptsManual segmentationHippocampal segmentationInter-rater reliabilityAutomated SegmentationSegmentation methodSegmentationAnatomical MRI scansEarly hippocampal developmentHead motionFreeSurfer softwareSoftwareHippocampal developmentMRI scansHippocampal structureAwake infantsInfantsHippocampusFMRI protocolAnatomical scansGold standardAdult templateHuman infantsScan qualityScansProtocol
2021
Brain kernel: A new spatial covariance function for fMRI data
Wu A, Nastase SA, Baldassano CA, Turk-Browne NB, Norman KA, Engelhardt BE, Pillow JW. Brain kernel: A new spatial covariance function for fMRI data. NeuroImage 2021, 245: 118580. PMID: 34740792, PMCID: PMC11542064, DOI: 10.1016/j.neuroimage.2021.118580.Peer-Reviewed Original ResearchBrain MappingHumansImage Processing, Computer-AssistedImaging, Three-DimensionalMagnetic Resonance ImagingNeuroimaging
2020
Searching through functional space reveals distributed visual, auditory, and semantic coding in the human brain
Kumar S, Ellis CT, O’Connell T, Chun MM, Turk-Browne NB. Searching through functional space reveals distributed visual, auditory, and semantic coding in the human brain. PLOS Computational Biology 2020, 16: e1008457. PMID: 33270655, PMCID: PMC7738169, DOI: 10.1371/journal.pcbi.1008457.Peer-Reviewed Original ResearchMeSH KeywordsAuditory PathwaysBrainBrain MappingHumansImage Processing, Computer-AssistedMagnetic Resonance ImagingModels, TheoreticalNatural Language ProcessingSemanticsVisual PathwaysConceptsBrain functionHuman brainHuman brain functionLanguage processing modelsNatural language processing modelsSearchlight analysisSearchlight approachSemantic codingObject representationsAuditory featuresBrain activityStrict modularityDecoding accuracyProcessing modelFMRI techniquesFMRI methodsAtlas parcellationCluster correctionComputational modelSemantic featuresDeep neural networksFoundational questionsAnatomical biasLocalized representationSearchlightBrainIAK tutorials: User-friendly learning materials for advanced fMRI analysis
Kumar M, Ellis CT, Lu Q, Zhang H, Capotă M, Willke TL, Ramadge PJ, Turk-Browne NB, Norman KA. BrainIAK tutorials: User-friendly learning materials for advanced fMRI analysis. PLOS Computational Biology 2020, 16: e1007549. PMID: 31940340, PMCID: PMC6961866, DOI: 10.1371/journal.pcbi.1007549.Peer-Reviewed Original ResearchMeSH KeywordsComputer-Assisted InstructionEducation, ContinuingHumansImage Processing, Computer-AssistedInternetMachine LearningMagnetic Resonance ImagingNeuroimagingSoftwareConceptsOpen-source Python software packageHigh-performance computing clusterNew programming languageOpen source softwareMachine-learning methodsPython software packageHigh-dimensional fMRI dataComputing clusterFile handlingMachine learningProgramming languageNovice usersDifferent softwareLarge memoryPython packageCustom codeSoftware packageSteep learning curveAdvanced toolsEfficient techniqueMarkov modelEvent segmentationReal-time fMRIAnalysis packageSoftware
2017
Neural Differentiation of Incorrectly Predicted Memories
Kim G, Norman KA, Turk-Browne NB. Neural Differentiation of Incorrectly Predicted Memories. Journal Of Neuroscience 2017, 37: 2022-2031. PMID: 28115478, PMCID: PMC5338753, DOI: 10.1523/jneurosci.3272-16.2017.Peer-Reviewed Original ResearchConceptsNeural representationPrevious contextTarget memoryBOLD activity patternsGreater neural differentiationMemory representationsHuman fMRIMemory weakeningTrial fashionSubsequent restudySuch memoriesIndividual memoryNeural network simulationMemoryControl conditionFMRIComputational modelItemsPrediction strengthRestudyNeural connectionsPrediction errorMore differentiationParticular contextRepresentation
2014
Optimizing real time fMRI neurofeedback for therapeutic discovery and development
Stoeckel LE, Garrison KA, Ghosh S, Wighton P, Hanlon CA, Gilman JM, Greer S, Turk-Browne NB, deBettencourt MT, Scheinost D, Craddock C, Thompson T, Calderon V, Bauer CC, George M, Breiter HC, Whitfield-Gabrieli S, Gabrieli JD, LaConte SM, Hirshberg L, Brewer JA, Hampson M, Van Der Kouwe A, Mackey S, Evins AE. Optimizing real time fMRI neurofeedback for therapeutic discovery and development. NeuroImage Clinical 2014, 5: 245-255. PMID: 25161891, PMCID: PMC4141981, DOI: 10.1016/j.nicl.2014.07.002.Peer-Reviewed Reviews, Practice Guidelines, Standards, and Consensus StatementsMeSH KeywordsBrain MappingHumansImage Processing, Computer-AssistedMagnetic Resonance ImagingNeurofeedbackConceptsBrain disordersBrain functionReal-time functional magnetic resonance imaging (rt-fMRI) neurofeedbackRtfMRI neurofeedbackFunctional magnetic resonance imaging (fMRI) neurofeedbackWorld Health OrganizationEffective treatmentClinical problemBrain-behavior relationshipsTherapeutic toolEffective interventionsHealth OrganizationDisordersNational InstituteIntervention approachesTherapeutic discoveryNeurofeedbackPersonalized assessmentRtfMRIMaladaptive patternsMorbidityNeurotherapeuticsPruning of memories by context-based prediction error
Kim G, Lewis-Peacock JA, Norman KA, Turk-Browne NB. Pruning of memories by context-based prediction error. Proceedings Of The National Academy Of Sciences Of The United States Of America 2014, 111: 8997-9002. PMID: 24889631, PMCID: PMC4066528, DOI: 10.1073/pnas.1319438111.Peer-Reviewed Original ResearchConceptsFunctional magnetic resonance imagingPattern similarity analysisLong-term memoryMultivariate pattern classificationContext-based predictionsExperienced contextItem representationsMemoryHuman brainUnreliable memorySimilarity analysisPrediction errorAdaptive processItemsMagnetic resonance imagingRobust supportRepresentationPattern classificationResonance imagingContextBrainMemory banksFindingsSupportBehavior
2013
Representations of individuals in ventral temporal cortex defined by faces and biographies
Verosky SC, Todorov A, Turk-Browne NB. Representations of individuals in ventral temporal cortex defined by faces and biographies. Neuropsychologia 2013, 51: 2100-2108. PMID: 23871881, PMCID: PMC3783605, DOI: 10.1016/j.neuropsychologia.2013.07.006.Peer-Reviewed Original ResearchAdolescentAdultFaceFemaleFunctional NeuroimagingHumansImage Processing, Computer-AssistedMagnetic Resonance ImagingMalePhotic StimulationRecognition, PsychologyTemporal Lobe
2012
Complementary attentional components of successful memory encoding
Turk-Browne NB, Golomb JD, Chun MM. Complementary attentional components of successful memory encoding. NeuroImage 2012, 66: 553-562. PMID: 23108276, PMCID: PMC3594515, DOI: 10.1016/j.neuroimage.2012.10.053.Peer-Reviewed Original ResearchMeSH KeywordsAdolescentAdultAttentionBrainBrain MappingCuesFemaleHumansImage Processing, Computer-AssistedMagnetic Resonance ImagingMaleMemoryYoung AdultConceptsSubsequent long-term memoryRole of attentionSuccessful memory encodingRight temporoparietal junctionRight of fixationVentral attention networkLong-term memoryMemory successAttentional facilitationFace cuesPerceptual processingAttentional componentsUncued locationsMemory encodingSpatial attentionFacilitated processingLater memoryTemporoparietal junctionScene stimuliFMRI designMemory failuresGreater activityParahippocampal cortexAttention networkMemory formationTop-down attention switches coupling between low-level and high-level areas of human visual cortex
Al-Aidroos N, Said CP, Turk-Browne NB. Top-down attention switches coupling between low-level and high-level areas of human visual cortex. Proceedings Of The National Academy Of Sciences Of The United States Of America 2012, 109: 14675-14680. PMID: 22908274, PMCID: PMC3437858, DOI: 10.1073/pnas.1202095109.Peer-Reviewed Original ResearchMeSH KeywordsAdultAttentionCognitionFixation, OcularGoalsHumansImage Processing, Computer-AssistedMagnetic Resonance ImagingPhotic StimulationRetinoscopyVisual CortexVisual PerceptionConceptsGoal-relevant informationHuman visual cortexHigh-level areasVisual areasEssential cognitive abilityVisual processing hierarchyVisual cortexLow-level areasAttentional goalsAttentional switchingFinite brainAttention operatesCognitive abilitiesAttention switchBackground connectivityProcessing hierarchyBehavioral successNeural activityVisual systemCurrent goalsComplex natural environmentsVisual stimulationSeparate influencesPrevious evidenceBackground couplingsRepresentations of Facial Identity in the Left Hemisphere Require Right Hemisphere Processing
Verosky SC, Turk-Browne NB. Representations of Facial Identity in the Left Hemisphere Require Right Hemisphere Processing. Journal Of Cognitive Neuroscience 2012, 24: 1006-1017. PMID: 22264197, PMCID: PMC3335342, DOI: 10.1162/jocn_a_00196.Peer-Reviewed Original ResearchConceptsLeft hemisphereRight hemisphereFacial identityLeft fusiform face areaFacial identity informationFusiform face areaRight visual fieldFace perceptionFMRI adaptationField presentationHemispheric specializationIdentity adaptationFace areaVisual systemVisual fieldIdentity informationHuman brainFaceHemispherePerceptionHypothesisIdentityAdaptationProcessingQuintessential example
2011
Category-Selective Background Connectivity in Ventral Visual Cortex
Norman-Haignere SV, McCarthy G, Chun MM, Turk-Browne NB. Category-Selective Background Connectivity in Ventral Visual Cortex. Cerebral Cortex 2011, 22: 391-402. PMID: 21670097, PMCID: PMC3256407, DOI: 10.1093/cercor/bhr118.Peer-Reviewed Original ResearchMeSH KeywordsAnalysis of VarianceBrain MappingConcept FormationFaceFemaleHumansImage Processing, Computer-AssistedLinear ModelsMagnetic Resonance ImagingMaleNeuropsychological TestsOxygenParahippocampal GyrusPattern Recognition, VisualPhotic StimulationReaction TimeRecognition, PsychologyTime FactorsVisual CortexVisual PathwaysYoung Adult
2009
Neural Evidence of Statistical Learning: Efficient Detection of Visual Regularities Without Awareness
Turk-Browne NB, Scholl BJ, Chun MM, Johnson MK. Neural Evidence of Statistical Learning: Efficient Detection of Visual Regularities Without Awareness. Journal Of Cognitive Neuroscience 2009, 21: 1934-1945. PMID: 18823241, PMCID: PMC2773825, DOI: 10.1162/jocn.2009.21131.Peer-Reviewed Original ResearchConceptsStatistical learningAbsence of awarenessMedial temporal lobeRobust neural responsesType of learningPerceptual processingNeural evidenceRelational memoryEvidence of learningNeural signaturesAssociative learningVisual regularityVisual regionsGreater activationNeural responsesStatistical regularitiesTemporal lobeUnstructured sequenceStatistical structureLearningLittle exposureUnsupervised learningAwarenessFMRIMemory
2006
Linking Implicit and Explicit Memory: Common Encoding Factors and Shared Representations
Turk-Browne NB, Yi DJ, Chun MM. Linking Implicit and Explicit Memory: Common Encoding Factors and Shared Representations. Neuron 2006, 49: 917-927. PMID: 16543138, DOI: 10.1016/j.neuron.2006.01.030.Peer-Reviewed Original ResearchConceptsExplicit memorySubsequent memoryBrain-behavior correlationsForms of memoryImplicit memoryImplicit measuresPerceptual processesBehavioral primingHuman memoryFMRI sessionsShared representationNovel scenesMemoryQuestions concernOpen question concernsSceneMeasuresRepresentationTime courseImplicitPrimingNatural time courseConventional measuresSessionsAttention