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List of Current Projects

  • In silico de-mixing of genomics signals from heterogeneous tumor cell populations into their leading subclonal components (
  • Boosting software tool performance via effective validations and crowd-sourcing ( and
  • Cancer biomarker discovery in whole-exome sequencing, RNA-Seq and immunohistochemistry
  • Approaches for studying the epigenetic landscape at different length scales
  • Combining 4C-seq, FISH and epigenetics for studying translocations in immune cells
  • Making sense of diversity of mutation profiles within specific cancer populations
  • Event detection in genomics data
  • Nonlinear dimensional reduction approaches for detecting genomic patterns
  • Inferring isoform usage by combining RNA-seq profiles from multiple states
  • Building user-friendly frameworks for ChIP-Seq analysis