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Scott Holley, PhD

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Professor of Molecular, Cellular and Developmental Biology

About

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Professor of Molecular, Cellular and Developmental Biology

Biography

I am Professor and Chair of the Department of Molecular, Cellular and Developmental Biology. My doctoral research at the University of Chicago with Chip Ferguson demonstrated the conservation of dorsal-ventral patterning mechanisms between insects and vertebrates, identified noggin as a BMP inhibitor and originated concept of facilitated morphogen diffusion. I was a Damon Runyon Cancer Research Foundation Postdoctoral Fellow with Nobel Laureate Christiane Nüsslein-Volhard at the Max Planck Institute for Developmental Biology in Tübingen, Germany. As a postdoc, I discovered the zebrafish segmentation clock, a genetic mechanism that leads to vertebral defects such as scoliosis when perturbed in humans. My lab studies the systems developmental biology, biophysics and biomechanics of vertebral column development in zebrafish. We combine in vivo single molecule biophysics, embryology, genetics, live imaging and systems level data analysis and computer modeling to study pattern formation and morphogenesis. We discovered roles for regulated tissue fluidity, self-organized ECM assembly and ECM-mediated inter-tissue adhesion in early spinal column development. My lab’s research has been supported by grants from the NIH, NSF, the American Cancer Society and the March of Dimes.

Education & Training

PhD
University of Chicago
Postdoctoral Fellow
Max Planck Institut für Entwicklungsbiologie, Tübingen, Germany

Research

Overview

The physical characteristics of the cellular environment influence cell differentiation, and reciprocally, cell differentiation often manifests as alterations in adhesion, rigidity and motility. Some of the most rapid and interdependent changes in both physical form and cell differentiation occur during embryonic development. However, we still have a poorly integrated understanding of the relationships between genetic control and the physical characteristics of tissues.

The tailbud is the posterior leading edge of the growing vertebrate embryo consisting of motile progenitors of the axial skeleton, musculature and spinal cord. In a recent study, we measured the 3-D cell flow field of the zebrafish tailbud and identified changes in tissue fluidity revealed by reductions in the coherence of cell motion without alteration of cell velocities. We found a directed posterior flow wherein the polarization between individual cell motion is high reflecting ordered collective migration. At the posterior tip of the tailbud, this flow makes sharp bilateral turns facilitated by with extensive cell mixing due to increased directional variability of individual cell motions. Genetic perturbation of cell signaling or cell adhesion reduces the coherence of the flow but has different consequence for trunk and tail extension. Interplay between the coherence and rate of cell flow determines whether congestion forms within the flow and the body axis becomes contorted. Future studies will build upon this systems understanding of tissue fluidity within the tailbud by incorporating additional signaling pathways and cell-extracellular matrix interactions, cell-cell adhesion as well as developing more accurate computer models of the cell flow. We are also studying the physical forces within tailbud and the reciprocal relationships between genetic control the physical properties of the cellular and tissue environment. These studies will increase understanding of how a tissue’s physical characteristics impacts morphogenesis, tissue homeostasis and disease in humans.

Medical Subject Headings (MeSH)

Biomechanical Phenomena; Developmental Biology; Genetics; Organogenesis; Systems Biology; Zebrafish

Research at a Glance

Yale Co-Authors

Frequent collaborators of Scott Holley's published research.

Publications

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2024

2023

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