2024
An affordable and open-source tool for mouse behavioral studiespyControl in an undergraduate research setting
Coller A, Alpern E, Clinton K, Estrada M, Emmons E. An affordable and open-source tool for mouse behavioral studiespyControl in an undergraduate research setting. BIOS 2024, 95: 176-182. DOI: 10.1893/bios-d-23-00018.Peer-Reviewed Original ResearchA Guideline for Open-Source Tools to Make Medical Imaging Data Ready for Artificial Intelligence Applications: A Society of Imaging Informatics in Medicine (SIIM) Survey
Vahdati S, Khosravi B, Mahmoudi E, Zhang K, Rouzrokh P, Faghani S, Moassefi M, Tahmasebi A, Andriole K, Chang P, Farahani K, Flores M, Folio L, Houshmand S, Giger M, Gichoya J, Erickson B. A Guideline for Open-Source Tools to Make Medical Imaging Data Ready for Artificial Intelligence Applications: A Society of Imaging Informatics in Medicine (SIIM) Survey. Journal Of Imaging Informatics In Medicine 2024, 37: 2015-2024. PMID: 38558368, PMCID: PMC11522208, DOI: 10.1007/s10278-024-01083-0.Peer-Reviewed Original ResearchConceptsArtificial intelligenceData curationSuccess of machine learningMedical image dataArtificial intelligence applicationsAI model developmentOpen-source toolIntelligence applicationsAI applicationsImaging informaticsMachine learningMedical imagesAI modelsOpen-sourceData readinessData preparationImage dataAnalytics projectsResearch areaArtificialDataCurationDecision-making processCompilation of toolsImages
2023
Serial KinderMiner (SKiM) discovers and annotates biomedical knowledge using co-occurrence and transformer models
Millikin R, Raja K, Steill J, Lock C, Tu X, Ross I, Tsoi L, Kuusisto F, Ni Z, Livny M, Bockelman B, Thomson J, Stewart R. Serial KinderMiner (SKiM) discovers and annotates biomedical knowledge using co-occurrence and transformer models. BMC Bioinformatics 2023, 24: 412. PMID: 37915001, PMCID: PMC10619245, DOI: 10.1186/s12859-023-05539-y.Peer-Reviewed Original ResearchConceptsLiterature-based discoveryKnowledge graphWeb interfaceLiterature-based discovery toolsUser-defined conceptsFunctional web-interfaceOpen-source toolBiomedical domainMachine-learning modelsOpen-source web interfaceBiomedical conceptsType labelsKnowledge domainsLiterature domainTransformation modelAlgorithmBiomedical knowledgeGraphQuerying thousandsPubMed archive
2022
View Classification of Color Doppler Echocardiography via Automatic Alignment Between Doppler and B-Mode Imaging
Charton J, Ren H, Khambhati J, DeFrancesco J, Cheng J, Waheed A, Marciniak S, Moura F, Cardoso R, Lima B, Steen E, Samset E, Picard M, Li X, Li Q. View Classification of Color Doppler Echocardiography via Automatic Alignment Between Doppler and B-Mode Imaging. Lecture Notes In Computer Science 2022, 13565: 64-71. DOI: 10.1007/978-3-031-16902-1_7.Peer-Reviewed Original ResearchColor Doppler echocardiography imageLow-dimensional embeddingDeep learning techniquesHeterogeneous image featuresOpen-source toolHuman annotatorsImage segmentationClassification algorithmsLearning techniquesB-mode imagesB-mode videosNon-intrusiveImage featuresAutomatic processingClassificationEchocardiography imagesDisease diagnosisImagesImage analysisVideoEmbeddingAlgorithmDatasetAnnotationB-mode
2017
A free, open-source tool for identifying urban agglomerations using polygon data
Day J, Chen Y, Ellis P, Roberts M. A free, open-source tool for identifying urban agglomerations using polygon data. Environment Systems And Decisions 2017, 37: 68-87. DOI: 10.1007/s10669-017-9623-z.Peer-Reviewed Original Research
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