2023
Systematic characterization of photoperiodic gene expression patterns reveals diverse seasonal transcriptional systems in Arabidopsis
Leung C, Tarté D, Oliver L, Wang Q, Gendron J. Systematic characterization of photoperiodic gene expression patterns reveals diverse seasonal transcriptional systems in Arabidopsis. PLOS Biology 2023, 21: e3002283. PMID: 37699055, PMCID: PMC10497145, DOI: 10.1371/journal.pbio.3002283.Peer-Reviewed Original ResearchConceptsExpression patternsCis-element analysisPhenylpropanoid biosynthesis pathwaySeasonal expression patternsImportant cellular pathwaysGene expression patternsThousands of genesFunctional enrichment analysisGene expression dataAlign growthArabidopsis plantsPhotoperiodic floweringTranscriptional networksPhotoperiodic genesBiosynthesis pathwayCellular processesPhenylpropanoid pathwayTranscriptomic experimentsTranscriptomic dataTranscriptional systemCellular pathwaysEnrichment analysisGene expressionGene clusteringExpression data
2019
Decoys provide a scalable platform for the identification of plant E3 ubiquitin ligases that regulate circadian function
Feke A, Liu W, Hong J, Li MW, Lee CM, Zhou EK, Gendron JM. Decoys provide a scalable platform for the identification of plant E3 ubiquitin ligases that regulate circadian function. ELife 2019, 8: e44558. PMID: 30950791, PMCID: PMC6483598, DOI: 10.7554/elife.44558.Peer-Reviewed Original ResearchConceptsE3 ubiquitin ligasesUbiquitin ligasesCircadian clockCircadian functionPlant E3 ubiquitin ligasesTransgenic Arabidopsis plantsNew potential regulatorsArabidopsis plantsRegulated degradationPlant developmentClock proteinsClock regulatorsFunctional redundancyE3 ubiquitinProtein degradationGenetic challengesLigasesPotential regulatorCircadian periodScreening platformUbiquitinRegulatorDecoysSplicingClock
2017
Increased efficiency of targeted mutagenesis by CRISPR/Cas9 in plants using heat stress
LeBlanc C, Zhang F, Mendez J, Lozano Y, Chatpar K, Irish V, Jacob Y. Increased efficiency of targeted mutagenesis by CRISPR/Cas9 in plants using heat stress. The Plant Journal 2017, 93: 377-386. PMID: 29161464, DOI: 10.1111/tpj.13782.Peer-Reviewed Original ResearchConceptsCRISPR/Green fluorescent protein (GFP) reporter geneCRISPR/Cas9 systemFluorescent protein reporter geneCRISPR/Cas9Off-target mutationsArabidopsis plantsEukaryotic genomesDifferent organismsSomatic tissuesCitrus plantsCas9 systemDNA breaksReporter geneTarget mutagenesisTargeted mutationsMutation rateMutagenesisImportance of temperatureArabidopsisHeat stressPlantsMutationsQuantitative assayEukaryotes
2000
Large-scale T-DNA mutagenesis in Arabidopsis for functional genomic analysis
Galbiati M, Moreno M, Nadzan G, Zourelidou M, Dellaporta S. Large-scale T-DNA mutagenesis in Arabidopsis for functional genomic analysis. Functional & Integrative Genomics 2000, 1: 25-34. PMID: 11793219, DOI: 10.1007/s101420000007.Peer-Reviewed Original ResearchConceptsT-DNA insertionArabidopsis plantsTransgenic plantsIndependent T-DNA insertionsBinary T-DNA vectorsTransgenic Arabidopsis plantsT-DNA lociT-DNA vectorsFunctional genomic studiesHerbicide-resistant plantsFunctional genomic analysisT-DNA mutagenesisPhosphinothricin acetyltransferase geneTransgenic ArabidopsisT1 plantsHerbicide FinaleFlower developmentSeed poolTransgenic linesGenomic studiesAgrobacterium tumefaciensGenomic analysisGene sequencesHerbicide selectionPlanta AgrobacteriumAntisense HEMA1 RNA Expression Inhibits Heme and Chlorophyll Biosynthesis in Arabidopsis1
Kumar A, Söll D. Antisense HEMA1 RNA Expression Inhibits Heme and Chlorophyll Biosynthesis in Arabidopsis1. Plant Physiology 2000, 122: 49-56. PMID: 10631248, PMCID: PMC58843, DOI: 10.1104/pp.122.1.49.Peer-Reviewed Original ResearchConceptsConstitutive cauliflower mosaic virus 35S promoterCauliflower mosaic virus 35S promoterTransgenic Arabidopsis plantsGlutamyl-tRNA reductaseBiosynthesis of tetrapyrrolesNormal growth conditionsLevels of chlorophyllFormation of ALAArabidopsis plantsChlorophyll biosynthesisHemA geneChlorophyll deficiencyGsa geneFirst enzymeGene expressionEnzymatic stepsSecond enzymeHeme synthesisPlantsReductase expressionChlorophyllGrowth conditionsBiosynthesisHemeGenes
1996
Cellular Interactions Mediated by the HomeoticPISTILLATAGene Determine Cell Fate in theArabidopsisFlower
Bouhidel K, Irish V. Cellular Interactions Mediated by the HomeoticPISTILLATAGene Determine Cell Fate in theArabidopsisFlower. Developmental Biology 1996, 174: 22-31. PMID: 8626018, DOI: 10.1006/dbio.1996.0048.Peer-Reviewed Original ResearchConceptsMeristematic cellsShoot apical meristem cellsShoot apical meristemDetermines cell fateCell-cell communicationApical meristem cellsDifferentiation of cellsArabidopsis plantsInner tissue layersArabidopsis flowersCoordinated divisionFloral organsPISTILLATA genesCell fateApical meristemFate mapMeristem cellsFloral primordiaChromosomal deletionsCellular interactionsFlowersEpidermal tissueInternal tissuesCellsPistillata
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