2008
Single locus typing of MHC class I and class II B loci in a population of red jungle fowl
Worley K, Gillingham M, Jensen P, Kennedy L, Pizzari T, Kaufman J, Richardson D. Single locus typing of MHC class I and class II B loci in a population of red jungle fowl. Immunogenetics 2008, 60: 233-247. PMID: 18389232, DOI: 10.1007/s00251-008-0288-0.Peer-Reviewed Original ResearchConceptsRed jungle fowlJungle fowlMajor histocompatibility complexClass II B lociMHC diversityExcess of non-synonymous substitutionsReference strand-mediated conformational analysisEstimates of genetic variationDomestic chickensMajor histocompatibility complex regionNon-synonymous substitutionsStrand-mediated conformational analysisStrength of selectionMultilocus measuresDiversifying selectionMeasures of diversityGene organisationIndividual lociExpression locusClass II BGenetic variationCaptive populationsWild ancestorGallus gallusB locus
2004
A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms
Ka-Shu Wong G, Liu B, Wang J, Zhang Y, Yang X, Zhang Z, Meng Q, Zhou J, Li D, Zhang J, Ni P, Li S, Ran L, Li H, Zhang J, Li R, Li S, Zheng H, Lin W, Li G, Wang X, Zhao W, Li J, Ye C, Dai M, Ruan J, Zhou Y, Li Y, He X, Zhang Y, Wang J, Huang X, Tong W, Chen J, Ye J, Chen C, Wei N, Li G, Dong L, Lan F, Sun Y, Zhang Z, Yang Z, Yu Y, Huang Y, He D, Xi Y, Wei D, Qi Q, Li W, Shi J, Wang M, Xie F, Wang J, Zhang X, Wang P, Zhao Y, Li N, Yang N, Dong W, Hu S, Zeng C, Zheng W, Hao B, Hillier L, Yang S, Warren W, Wilson R, Brandström M, Ellegren H, Crooijmans R, van der Poel J, Bovenhuis H, Groenen M, Ovcharenko I, Gordon L, Stubbs L, Lucas S, Glavina T, Aerts A, Kaiser P, Rothwell L, Young J, Rogers S, Walker B, van Hateren A, Kaufman J, Bumstead N, Lamont S, Zhou H, Hocking P, Morrice D, de Koning D, Law A, Bartley N, Burt D, Hunt H, Cheng H, Gunnarsson U, Wahlberg P, Andersson L, Kindlund E, Tammi M, Andersson B, Webber C, Ponting C, Overton I, Boardman P, Tang H, Hubbard S, Wilson S, Yu J, Wang J, Yang H. A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms. Nature 2004, 432: 717-722. PMID: 15592405, PMCID: PMC2263125, DOI: 10.1038/nature03156.Peer-Reviewed Original ResearchConceptsSingle-nucleotide polymorphismsGenetic variation mapRed jungle fowlJungle fowlWild ancestorDomesticated linesMean nucleotide diversityDomestic chicken breedsChicken breedsNucleotide diversityChicken genomeAdaptive allelesDomestic breedsVariant sitesDomestic animalsVariation mapsBreedingFowlChickenAncestorPolymorphismGenomeKilobasesAllelesDomestication
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