2025
Complete genome sequence of a novel Acinetobacter spp. linked to an outbreak of sepsis following apheresis platelet transfusion
Kent A, Sula E, Breaker E, McAllister G, Gable P, Chan-Riley M, Leung V, Peaper D, Jones S, Jones J, Basavaraju S, Halpin A. Complete genome sequence of a novel Acinetobacter spp. linked to an outbreak of sepsis following apheresis platelet transfusion. Microbiology Resource Announcements 2025, 14: e01361-24. PMID: 40503797, PMCID: PMC12243513, DOI: 10.1128/mra.01361-24.Peer-Reviewed Original Research
2023
Whole genome sequencing data of Leptospira weilii and Leptospira kirschneri isolated from human subjects of Sri Lanka
Senavirathna I, Jayasundara D, Warnasekara J, Matthias M, Vinetz J, Agampodi S. Whole genome sequencing data of Leptospira weilii and Leptospira kirschneri isolated from human subjects of Sri Lanka. Data In Brief 2023, 52: 109840. PMID: 38059003, PMCID: PMC10696454, DOI: 10.1016/j.dib.2023.109840.Peer-Reviewed Original ResearchGenome sequenceSingle-molecule real-time platformsNCBI Prokaryotic Genome Annotation PipelineLeptospira weiliiHigh-quality genomic DNAProkaryotic Genome Annotation PipelineComparative genomic analysisWhole-genome sequencing dataComplete genome sequenceGenome Annotation PipelineGenome sequencing dataLeptospira kirschneriMid-log phase culturesWhole-genome sequencingGenome featuresGenomic analysisAnnotation pipelineGenomic DNASequencing dataGenome sequencingNovel strainMolecular diagnostic toolsPhase culturesSpeciesGenus Leptospira
2022
Whole Genome Analyses Accurately Identify Neisseria spp. and Limit Taxonomic Ambiguity
Khoder M, Osman M, Kassem I, Rafei R, Shahin A, Fournier P, Rolain J, Hamze M. Whole Genome Analyses Accurately Identify Neisseria spp. and Limit Taxonomic Ambiguity. International Journal Of Molecular Sciences 2022, 23: 13456. PMID: 36362240, PMCID: PMC9657967, DOI: 10.3390/ijms232113456.Peer-Reviewed Original ResearchConceptsDraft genomeComplete genome sequenceWhole-genome analysisNCBI GenBank databaseMatrix-assisted laser desorptionGenomic toolsPhylogenetic relationshipsTaxonomic ambiguityBacterial taxonomyGenome sequenceGenome analysisGenomic levelTaxonomic relationshipsTaxonomic toolGenBank databaseGenome sequencingGenomeLaser desorptionSpeciesNeisseria sppWGS analysisSppNeisseriaSequencingStrains
2021
Assembly and Annotation of the Complete Genome Sequence of T4-Like Bacteriophage 132
Roush C, Chan B, Turner P, Burmeister A. Assembly and Annotation of the Complete Genome Sequence of T4-Like Bacteriophage 132. Microbiology Resource Announcements 2021, 10: 10.1128/mra.00649-21. PMID: 34591682, PMCID: PMC8483715, DOI: 10.1128/mra.00649-21.Peer-Reviewed Original Research
2016
Complete Genome Sequences of Eight Human Papillomavirus Type 16 Asian American and European Variant Isolates from Cervical Biopsies and Lesions in Indian Women
Mandal P, Bhattacharjee B, Sen S, Bhattacharya A, Chowdhury R, Mondal N, Sengupta S. Complete Genome Sequences of Eight Human Papillomavirus Type 16 Asian American and European Variant Isolates from Cervical Biopsies and Lesions in Indian Women. Microbiology Resource Announcements 2016, 4: e00243-16. PMID: 27198009, PMCID: PMC4878291, DOI: 10.1128/genomea.00243-16.Peer-Reviewed Original ResearchComplete genome sequenceGenome sequenceHuman papillomavirus type 16Asian-American variantsVariant isolatesPapillomaviridae familyPrimary etiological agentEtiological agent of cervical cancerAgent of cervical cancerType 16Papillomavirus typePrimary etiological agent of cervical cancerEuropean variantsSequenceAmerican variantHuman papillomavirus typeVariantsPapillomaviridaeIsolatesHPV16Cervical biopsyThe Complete Genome Sequences, Unique Mutational Spectra, and Developmental Potency of Adult Neurons Revealed by Cloning
Hazen JL, Faust GG, Rodriguez AR, Ferguson WC, Shumilina S, Clark RA, Boland MJ, Martin G, Chubukov P, Tsunemoto RK, Torkamani A, Kupriyanov S, Hall IM, Baldwin KK. The Complete Genome Sequences, Unique Mutational Spectra, and Developmental Potency of Adult Neurons Revealed by Cloning. Neuron 2016, 89: 1223-1236. PMID: 26948891, PMCID: PMC4795965, DOI: 10.1016/j.neuron.2016.02.004.Peer-Reviewed Original ResearchMeSH KeywordsAge FactorsAnimalsAnimals, NewbornCadherin Related ProteinsCadherinsCell DivisionCloning, MolecularDNA Transposable ElementsEmbryo, MammalianFemaleHumansKi-67 AntigenMiceMice, TransgenicMicrosatellite RepeatsMutationNerve Tissue ProteinsNeuronsNuclear Transfer TechniquesOlfactory BulbOocytesSequence Analysis, DNAConceptsCell type diversificationComplete genome sequenceMobile element insertionsNuclear transfer methodWhole-genome sequencingNeuronal genomeGene-disrupting mutationsNeuronal mutationsGenome sequenceUnique mutational spectrumDevelopmental potencyComprehensive mutation detectionElement insertionsGenomic mutationsRecurrent rearrangementsNovel mechanismUnique mutationsMutationsSomatic mutationsGene biasGenomeAdult neuronsMutational spectrumFertile miceMutation detection
2008
Identification of an isoschizomer of the HhaI DNA methyltransferase in Mycoplasma arthritidis
Luo W, Tu A, Cao Z, Yu H, Dybvig K. Identification of an isoschizomer of the HhaI DNA methyltransferase in Mycoplasma arthritidis. FEMS Microbiology Letters 2008, 290: 195-198. PMID: 19054074, PMCID: PMC2668981, DOI: 10.1111/j.1574-6968.2008.01428.x.Peer-Reviewed Original ResearchConceptsHhaI DNA methyltransferaseDNA methyltransferaseRestriction endonucleasesComplete genome sequenceE. coli cellsAluI restriction endonucleaseM. arthritidisGenome sequenceTGA codonCytosine residuesColi cellsGenomic DNAHhaI sitesMycoplasma arthritidisBase modificationsRestriction endonuclease HhaI.GCGC sitesEscherichia coliMethyltransferaseDNAE. coliGenesEndonucleaseIsoschizomerColi
2007
Symbiosis-Based Technological Advances to Improve Tsetse Glossina spp. SIT Application
Aksoy S, Weiss B. Symbiosis-Based Technological Advances to Improve Tsetse Glossina spp. SIT Application. 2007, 137-148. DOI: 10.1007/978-1-4020-6059-5_12.Peer-Reviewed Original ResearchSterile insect techniqueCytoplasmic incompatibilityField populationsWolbachia infectionGene productsTsetse fliesGerm-line transformationComplete genome sequencePresence of WolbachiaGene expression experimentsPest control toolForeign gene productsParasitic African trypanosomesGlossina sppMidgut symbiontsArea-wide basisFly developmentInsect speciesReproductive incompatibilitySIT applicationMale sterilityUninfected insectsGenome sequenceMating incompatibilityExpression experiments
2001
Phylogenetic analysis of Japanese encephalitis virus: envelope gene based analysis reveals a fifth genotype, geographic clustering, and multiple introductions of the virus into the Indian subcontinent.
Uchil P, Satchidanandam V. Phylogenetic analysis of Japanese encephalitis virus: envelope gene based analysis reveals a fifth genotype, geographic clustering, and multiple introductions of the virus into the Indian subcontinent. American Journal Of Tropical Medicine And Hygiene 2001, 65: 242-51. PMID: 11561712, DOI: 10.4269/ajtmh.2001.65.242.Peer-Reviewed Original ResearchMeSH KeywordsAedesAmino Acid SequenceAnimalsBase SequenceCell LineCluster AnalysisDNA, ComplementaryEncephalitis Virus, JapaneseEncephalitis, JapaneseEvolution, MolecularGenes, envGenetic VariationGenotypeHumansIndiaMolecular Sequence DataPhylogenyReverse Transcriptase Polymerase Chain ReactionRNA, ViralSequence Homology, Amino AcidSequence Homology, Nucleic AcidSwine
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