2024
Cell-specific gene networks and drivers in rheumatoid arthritis synovial tissues
Pelissier A, Laragione T, Gulko P, Martínez M. Cell-specific gene networks and drivers in rheumatoid arthritis synovial tissues. Frontiers In Immunology 2024, 15: 1428773. PMID: 39161769, PMCID: PMC11330812, DOI: 10.3389/fimmu.2024.1428773.Peer-Reviewed Original ResearchTranscription factorsNatural killer TPhenotypic differencesGene regulatory networksCo-regulatory networkRNA-seq databaseCell typesFibroblast-like synoviocytesRNA-seqRegulatory networksGene networksTF clustersMultiple cell typesB cellsCell regulationKiller TRheumatoid arthritis synovial tissuePhenotypic groupsRA pathogenesisRA synovial tissuePathway changesTissue genesGenesCompare network propertiesComputational approach
2022
Brain ventricles as windows into brain development and disease
Duy PQ, Rakic P, Alper SL, Butler WE, Walsh CA, Sestan N, Geschwind DH, Jin SC, Kahle KT. Brain ventricles as windows into brain development and disease. Neuron 2022, 110: 12-15. PMID: 34990576, PMCID: PMC9212067, DOI: 10.1016/j.neuron.2021.12.009.Peer-Reviewed Original Research
2020
ANGPTL4: a multifunctional protein involved in metabolism and vascular homeostasis.
Fernández-Hernando C, Suárez Y. ANGPTL4: a multifunctional protein involved in metabolism and vascular homeostasis. Current Opinion In Hematology 2020, 27: 206-213. PMID: 32205586, PMCID: PMC9013473, DOI: 10.1097/moh.0000000000000580.Peer-Reviewed Original ResearchConceptsStem cell regulationPotential therapeutic targetLipid metabolismCell-specific functionsSpecific molecular eventsNonmetabolic functionsRegulatory circuitsMultifunctional proteinTherapeutic targetUnanticipated roleInvolvement of ANGPTL4Molecular eventsCell regulationPhysiological roleTherapeutic applicationsPredominant expressionVascular biologyPotential therapeutic applicationsVascular homeostasisPathophysiological conditionsDifferent disease settingsANGPTL4MetabolismFirst discoveryBiological effects
2016
Chapter 1 Methods to study maternal regulation of germ cell specification in zebrafish
Kaufman O, Marlow F. Chapter 1 Methods to study maternal regulation of germ cell specification in zebrafish. Methods In Cell Biology 2016, 134: 1-32. PMID: 27312489, PMCID: PMC5039941, DOI: 10.1016/bs.mcb.2016.02.001.Peer-Reviewed Original ResearchConceptsGerm cell specificationGerm cell formationCell-specificGerm lineControl of maternal gene productsProcess of germ cell specificationMaternal gene productsGerm cell regulationGerm cell developmentLoss-of-function studiesZebrafish genomeManipulating genomesGenetic tractabilityGenetic regulationGenetic screeningGene productsCell formationMolecular biology techniquesExpression analysisCell developmentMolecular regulationCell regulationEarly embryosIn situ hybridizationGenetic models
2013
The Adult Stem Cell Niche
Ramakrishnan A, Pillai M, Torok-Storb B. The Adult Stem Cell Niche. Stem Cell Biology And Regenerative Medicine 2013, 15-30. DOI: 10.1007/978-1-4614-9569-7_2.Peer-Reviewed Original ResearchStem cell fateStem cell nicheCell fateStem cellsCell nicheAdult stem cell nichesTissue-specific adult stem cellsStem cell regulationStem cell poolAdult stem cellsPluripotent stateCell regulationSpecialized microenvironmentMature cellsHematopoietic systemCell poolQuiescent stateNicheTissue repairCellsFatePluripotencyIntense researchTherapeutic purposesRegulation
2012
Proteomic Identification of S-Nitrosylated Golgi Proteins: New Insights into Endothelial Cell Regulation by eNOS-Derived NO
Sangwung P, Greco TM, Wang Y, Ischiropoulos H, Sessa WC, Iwakiri Y. Proteomic Identification of S-Nitrosylated Golgi Proteins: New Insights into Endothelial Cell Regulation by eNOS-Derived NO. PLOS ONE 2012, 7: e31564. PMID: 22363674, PMCID: PMC3283662, DOI: 10.1371/journal.pone.0031564.Peer-Reviewed Original ResearchConceptsGolgi proteinsGolgi phosphoprotein 3S-nitrosylationGolgi apparatusCysteine residuesSelective S-nitrosylationPlasma membrane caveolaeGolgi/endoplasmic reticulumProtein S-nitrosylationTarget cysteine residuesEndothelial cellsEndothelial nitric oxide synthaseMembrane caveolaeEndothelial cell lysatesProteomic identificationEndothelial cell regulationGolgi membranesBiotin switchCell regulationEndoplasmic reticulumENOS stimulationCell lysatesProteinImmunoprecipitationWestern blot
2008
Ubiquitin and Ubiquitin‐like Protein Conjugation
Hochstrasser M. Ubiquitin and Ubiquitin‐like Protein Conjugation. 2008, 249-278. DOI: 10.1002/9783527610754.mr02.Peer-Reviewed Original ResearchEukaryotic cell regulationR. John MayerUbiquitin-like proteinConjugation systemAaron CiechanoverEvolutionary originMartin RechsteinerMost ubiquitinUbl systemsProtein modifiersProtein modificationProtein degradationBiological processesUbiquitinCell regulationMacromolecular interactionsRelated enzymesEnormous arrayProteinDistinct mechanismsConjugated proteinsFunctional featuresRapid degradationPervasive roleJohn Mayer
2004
Impaired PtdIns(4,5)P2 synthesis in nerve terminals produces defects in synaptic vesicle trafficking
Paolo G, Moskowitz HS, Gipson K, Wenk MR, Voronov S, Obayashi M, Flavell R, Fitzsimonds RM, Ryan TA, Camilli P. Impaired PtdIns(4,5)P2 synthesis in nerve terminals produces defects in synaptic vesicle trafficking. Nature 2004, 431: 415-422. PMID: 15386003, DOI: 10.1038/nature02896.Peer-Reviewed Original ResearchMeSH KeywordsAction PotentialsAnimalsBiological TransportCells, CulturedClathrinElectric ConductivityEndocytosisExocytosisGene DeletionKineticsMiceMice, KnockoutNeuronsPhosphatidylinositol 4,5-DiphosphatePhosphatidylinositol PhosphatesPhosphotransferases (Alcohol Group Acceptor)Presynaptic TerminalsSynaptic TransmissionSynaptic VesiclesConceptsClathrin coat dynamicsSynaptic vesicle cycleSynaptic vesicle exocytosisSynaptic vesicle traffickingSecond messenger moleculesEarly postnatal lethalityEndocytic intermediatesVesicle traffickingMembrane proteinsVesicle cycleVesicle exocytosisPostnatal lethalityCell regulationRecycling kineticsMessenger moleculesBiochemical studiesSynaptic defectsDirect interactionImportant functionsCritical roleMultiple stepsReleasable poolRegulationNerve terminalsDephosphorylation
1992
Ubiquitin and intracellular protein degradation
Hochstrasser M. Ubiquitin and intracellular protein degradation. Current Opinion In Cell Biology 1992, 4: 1024-1031. PMID: 1336669, DOI: 10.1016/0955-0674(92)90135-y.Peer-Reviewed Original ResearchConceptsEukaryotic cell regulationConjugation of ubiquitinUbiquitin systemProteolytic targetingProtein degradationIntracellular proteinsProtein turnoverCell regulationDiverse arrayUbiquitinCentral roleProteinEukaryotesMajor routeUbiquitinationProteaseEnzymeDegradationPathwayRegulationRecent workTargetingTurnoverPeptides
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