2021
Retrospective cell lineage reconstruction in humans by using short tandem repeats
Tao L, Raz O, Marx Z, Ghosh MS, Huber S, Greindl-Junghans J, Biezuner T, Amir S, Milo L, Adar R, Levy R, Onn A, Chapal-Ilani N, Berman V, Arie A, Rom G, Oron B, Halaban R, Czyz ZT, Werner-Klein M, Klein CA, Shapiro E. Retrospective cell lineage reconstruction in humans by using short tandem repeats. Cell Reports Methods 2021, 1: 100054. PMID: 34341783, PMCID: PMC8313865, DOI: 10.1016/j.crmeth.2021.100054.Peer-Reviewed Original ResearchConceptsLineage reconstructionShort tandem repeatsCell lineagesTandem repeatsCell lineage reconstructionCell lineage analysisSingle cellsLineage tracing methodHuman cell lineagesGenome editingLineage analysisMolecular inversion probesReconstructed lineagesLineagesDU145 cellsSomatic mutationsDiscovery platformCell of originRepeatsHealthy cellsCellsImportant insightsTissue formationOrganismsDevelopmental history
2019
Isotropic Light-Sheet Microscopy and Automated Cell Lineage Analyses to Catalogue Caenorhabditis elegans Embryogenesis with Subcellular Resolution
Duncan L, Moyle M, Shao L, Sengupta T, Ikegami R, Kumar A, Guo M, Christensen R, Santella A, Bao Z, Shroff H, Mohler W, Colón-Ramos D. Isotropic Light-Sheet Microscopy and Automated Cell Lineage Analyses to Catalogue Caenorhabditis elegans Embryogenesis with Subcellular Resolution. Journal Of Visualized Experiments 2019 DOI: 10.3791/59533-v.Peer-Reviewed Original ResearchIsotropic Light-Sheet Microscopy and Automated Cell Lineage Analyses to Catalogue Caenorhabditis elegans Embryogenesis with Subcellular Resolution.
Duncan LH, Moyle MW, Shao L, Sengupta T, Ikegami R, Kumar A, Guo M, Christensen R, Santella A, Bao Z, Shroff H, Mohler W, Colón-Ramos DA. Isotropic Light-Sheet Microscopy and Automated Cell Lineage Analyses to Catalogue Caenorhabditis elegans Embryogenesis with Subcellular Resolution. Journal Of Visualized Experiments 2019 PMID: 31233035, PMCID: PMC7255390, DOI: 10.3791/59533.Peer-Reviewed Original ResearchConceptsGene expressionC. elegans embryosCell lineage identityCell lineage analysisSingle-cell resolutionElegans embryosCaenorhabditis elegansC. elegansSelective plane illumination microscopyLight-sheet microscopyLineage analysisNematode embryosCell resolutionEntire nervous systemSubcellular levelOnly organismSubcellular resolutionElegansCellular originSingle cellsEmbryosIllumination microscopyEmbryogenesisMorphological dynamicsExpression
2016
A generic, cost-effective, and scalable cell lineage analysis platform
Biezuner T, Spiro A, Raz O, Amir S, Milo L, Adar R, Chapal-Ilani N, Berman V, Fried Y, Ainbinder E, Cohen G, Barr H, Halaban R, Shapiro E. A generic, cost-effective, and scalable cell lineage analysis platform. Genome Research 2016, 26: 1588-1599. PMID: 27558250, PMCID: PMC5088600, DOI: 10.1101/gr.202903.115.Peer-Reviewed Original ResearchConceptsLineage analysisSingle cell lineage analysisSingle-cell sequencing dataSingle-cell genomicsCurrent sequencing-based methodsIndividual cellsCell lineage analysisSingle-cell sequencingSequencing-based methodsLineage treesSequencing dataLineage relationsCellsTreesGenomicsAnalysis platformInput cellsSequencingBulk analysisVivoDiscoveryLandscape
2010
Interplay between Foxd3 and Mitf regulates cell fate plasticity in the zebrafish neural crest
Curran K, Lister JA, Kunkel GR, Prendergast A, Parichy DM, Raible DW. Interplay between Foxd3 and Mitf regulates cell fate plasticity in the zebrafish neural crest. Developmental Biology 2010, 344: 107-118. PMID: 20460180, PMCID: PMC2909359, DOI: 10.1016/j.ydbio.2010.04.023.Peer-Reviewed Original ResearchMeSH KeywordsAnimalsAnimals, Genetically ModifiedCell LineageForkhead Transcription FactorsGene Expression Regulation, DevelopmentalMelanocytesMicrophthalmia-Associated Transcription FactorMicroscopy, FluorescenceModels, BiologicalModels, GeneticMutationNeural CrestPhylogenyPigmentationZebrafishZebrafish ProteinsConceptsIridophore developmentPigment cellsCell fate plasticityZebrafish neural crestCell fate decisionsTranscription factor MITFCell lineage analysisNeural crest cellsIridescent iridophoresBlack melanophoresYellow xanthophoresMelanophore developmentFate decisionsFate plasticityTranscriptional switchDouble mutantTractable systemDanio rerioLineage analysisMelanoblast markerCrest cellsKey regulatorFoxD3Neural crestIridophores
1991
Cell lineage analysis of the gynoecium of maize using the transposable element Ac
Dellaporta S, Moreno M, Delong A. Cell lineage analysis of the gynoecium of maize using the transposable element Ac. Development (Cambridge, England). Supplement 1991, 113: 141-147. PMID: 1660327, DOI: 10.1242/dev.113.supplement_1.141.Peer-Reviewed Original ResearchConceptsCell lineagesRed flavonoid pigmentsCell lineage analysisDistinct cell lineagesSomatic sector analysisTransposable element AcExcision of AcEpidermal lineageSomatic sectorsLineage analysisFused carpelsP locusSingle cell layerSubepidermal cellsFlavonoid pigmentsElement AcLineagesEpidermal outgrowthsPericlinal divisionsCell layerCarpelsGynoeciumOutgrowthCellsMegasporocyte
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